SeqVarTools

This is thereleased version of SeqVarTools; for the devel version, seeSeqVarTools.

Tools for variant data

Bioconductor version: Release (3.22)

An interface to the fast-access storage format for VCF data provided in SeqArray, with tools for common operations and analysis.

Author: Stephanie M. Gogarten, Xiuwen Zheng, Adrienne Stilp

Maintainer: Stephanie M. Gogarten <sdmorris at uw.edu>

Citation (from within R, entercitation("SeqVarTools")):

To install this package, start R (version "4.5") and enter:

if (!require("BiocManager", quietly = TRUE))    install.packages("BiocManager")BiocManager::install("SeqVarTools")

For older versions of R, please refer to the appropriateBioconductor release.

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("SeqVarTools")

Introduction to SeqVarTools	PDF	R Script
Iterators in SeqVarTools	PDF	R Script
Reference Manual	PDF
NEWS	Text

biocViews	GeneticVariability,Genetics,SNP,Sequencing,Software
Version	1.48.0
In Bioconductor since	BioC 2.13 (R-3.0) (12 years)
License	GPL-3
Depends	SeqArray
Imports	grDevices, graphics, stats, methods,Biobase,BiocGenerics,gdsfmt,GenomicRanges,IRanges,S4Vectors,GWASExactHW,logistf,Matrix,data.table
System Requirements
URL	https://github.com/smgogarten/SeqVarTools

FollowInstallation instructions to use this package in your R session.

Source Package	SeqVarTools_1.48.0.tar.gz
Windows Binary (x86_64)	SeqVarTools_1.48.0.zip
macOS Binary (x86_64)	SeqVarTools_1.48.0.tgz
macOS Binary (arm64)	SeqVarTools_1.48.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/SeqVarTools
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/SeqVarTools
Bioc Package Browser	https://code.bioconductor.org/browse/SeqVarTools/
Package Short Url	https://bioconductor.org/packages/SeqVarTools/
Package Downloads Report	Download Stats