Rhtslib
This is thereleased version of Rhtslib; for the devel version, seeRhtslib.
HTSlib high-throughput sequencing library as an R package
Bioconductor version: Release (3.22)
This package provides version 1.18 of the 'HTSlib' C library for high-throughput sequence analysis. The package is primarily useful to developers of other R packages who wish to make use of HTSlib. Motivation and instructions for use of this package are in the vignette, vignette(package="Rhtslib", "Rhtslib").
Author: Nathaniel Hayden [led, aut], Martin Morgan [aut], Hervé Pagès [aut, cre], Tomas Kalibera [ctb], Jeroen Ooms [ctb]
Maintainer: Hervé Pagès <hpages.on.github at gmail.com>
citation("Rhtslib")):Installation
To install this package, start R (version "4.5") and enter:
if (!require("BiocManager", quietly = TRUE)) install.packages("BiocManager")BiocManager::install("Rhtslib")For older versions of R, please refer to the appropriateBioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("Rhtslib")| Motivation and use of Rhtslib | HTML | R Script |
| Reference Manual | ||
| NEWS | Text |
Details
| biocViews | DataImport,Sequencing,Software |
| Version | 3.6.0 |
| In Bioconductor since | BioC 3.1 (R-3.2) (10.5 years) |
| License | LGPL (>= 2) |
| Depends | |
| Imports | tools |
| System Requirements | libbz2 & liblzma & libcurl (with header files), GNU make |
| URL | https://bioconductor.org/packages/Rhtslibhttp://www.htslib.org/ |
| Bug Reports | https://github.com/Bioconductor/Rhtslib/issues |
See More
| Suggests | knitr,rmarkdown,BiocStyle |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | deepSNV,diffHic,maftools,mitoClone2,scPipe,stPipe |
| Suggests Me | |
| Links To Me | bamsignals,csaw,deepSNV,DiffBind,diffHic,epialleleR,FLAMES,h5vc,iscream,maftools,methylKit,mitoClone2,podkat,QuasR,raer,Rsamtools,scPipe,ShortRead,stPipe,VariantAnnotation,jackalope |
| Build Report | Build Report |
Package Archives
FollowInstallation instructions to use this package in your R session.
| Source Package | Rhtslib_3.6.0.tar.gz |
| Windows Binary (x86_64) | Rhtslib_3.6.0.zip |
| macOS Binary (x86_64) | Rhtslib_3.6.0.tgz |
| macOS Binary (arm64) | Rhtslib_3.6.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/Rhtslib |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/Rhtslib |
| Bioc Package Browser | https://code.bioconductor.org/browse/Rhtslib/ |
| Package Short Url | https://bioconductor.org/packages/Rhtslib/ |
| Package Downloads Report | Download Stats |