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OrganismDbi
This is thereleased version of OrganismDbi; for the devel version, seeOrganismDbi.
Software to enable the smooth interfacing of different database packages
Bioconductor version: Release (3.22)
The package enables a simple unified interface to several annotation packages each of which has its own schema by taking advantage of the fact that each of these packages implements a select methods.
Author: Marc Carlson [aut], Martin Morgan [aut], Valerie Obenchain [aut], Aliyu Atiku Mustapha [ctb] (Converted 'OrganismDbi' vignette from Sweave to RMarkdown / HTML.), Bioconductor Package Maintainer [cre]
Maintainer: Bioconductor Package Maintainer <maintainer at bioconductor.org>
citation("OrganismDbi")):Installation
To install this package, start R (version "4.5") and enter:
if (!require("BiocManager", quietly = TRUE)) install.packages("BiocManager")BiocManager::install("OrganismDbi")For older versions of R, please refer to the appropriateBioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("OrganismDbi")| OrganismDbi: A meta framework for Annotation Packages | HTML | R Script |
| Reference Manual | ||
| NEWS | Text |
Details
| biocViews | Annotation,Infrastructure,Software |
| Version | 1.52.0 |
| In Bioconductor since | BioC 2.11 (R-2.15) (13 years) |
| License | Artistic-2.0 |
| Depends | R (>= 2.14.0),BiocGenerics(>= 0.15.10),AnnotationDbi(>= 1.33.15),Seqinfo,GenomicFeatures(>= 1.61.4) |
| Imports | methods, utils, stats,DBI,BiocManager,Biobase,graph,RBGL,S4Vectors,IRanges,GenomicRanges(>= 1.61.1) |
| System Requirements | |
| URL |
See More
| Suggests | txdbmaker,GenomeInfoDbData,Homo.sapiens,Rattus.norvegicus,BSgenome.Hsapiens.UCSC.hg19,AnnotationHub,FDb.UCSC.tRNAs,rtracklayer,biomaRt,RUnit,RMariaDB,BiocStyle,knitr |
| Linking To | |
| Enhances | |
| Depends On Me | Homo.sapiens,Mus.musculus,Rattus.norvegicus |
| Imports Me | AnnotationHubData,epivizrData,ggbio,uncoverappLib |
| Suggests Me | ChIPpeakAnno,epivizrStandalone |
| Links To Me | |
| Build Report | Build Report |
Package Archives
FollowInstallation instructions to use this package in your R session.
| Source Package | OrganismDbi_1.52.0.tar.gz |
| Windows Binary (x86_64) | OrganismDbi_1.52.0.zip |
| macOS Binary (x86_64) | OrganismDbi_1.52.0.tgz |
| macOS Binary (arm64) | OrganismDbi_1.52.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/OrganismDbi |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/OrganismDbi |
| Bioc Package Browser | https://code.bioconductor.org/browse/OrganismDbi/ |
| Package Short Url | https://bioconductor.org/packages/OrganismDbi/ |
| Package Downloads Report | Download Stats |