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MethylSeekR
This is thereleased version of MethylSeekR; for the devel version, seeMethylSeekR.
Segmentation of Bis-seq data
Bioconductor version: Release (3.22)
This is a package for the discovery of regulatory regions from Bis-seq data
Author: Lukas Burger, Dimos Gaidatzis, Dirk Schubeler and Michael Stadler
Maintainer: Lukas Burger <Lukas.Burger at fmi.ch>
Citation (from within R, enter
citation("MethylSeekR")):Installation
To install this package, start R (version "4.5") and enter:
if (!require("BiocManager", quietly = TRUE)) install.packages("BiocManager")BiocManager::install("MethylSeekR")For older versions of R, please refer to the appropriateBioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("MethylSeekR")| MethylSeekR | R Script | |
| Reference Manual |
Details
| biocViews | DNAMethylation,MethylSeq,Sequencing,Software |
| Version | 1.50.0 |
| In Bioconductor since | BioC 2.12 (R-3.0) (12.5 years) |
| License | GPL (>=2) |
| Depends | rtracklayer(>= 1.16.3), parallel (>= 2.15.1),mhsmm (>= 0.4.4) |
| Imports | IRanges(>= 1.16.3),BSgenome(>= 1.26.1),GenomicRanges(>= 1.10.5),geneplotter(>= 1.34.0), graphics (>= 2.15.2), grDevices (>= 2.15.2), parallel (>= 2.15.2), stats (>= 2.15.2), utils (>= 2.15.2),GenomeInfoDb |
| System Requirements | |
| URL |
See More
| Suggests | BSgenome.Hsapiens.UCSC.hg38 |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | methylPipe,RnBeads |
| Links To Me | |
| Build Report | Build Report |
Package Archives
FollowInstallation instructions to use this package in your R session.
| Source Package | MethylSeekR_1.50.0.tar.gz |
| Windows Binary (x86_64) | MethylSeekR_1.50.0.zip |
| macOS Binary (x86_64) | MethylSeekR_1.50.0.tgz |
| macOS Binary (arm64) | MethylSeekR_1.50.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/MethylSeekR |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/MethylSeekR |
| Bioc Package Browser | https://code.bioconductor.org/browse/MethylSeekR/ |
| Package Short Url | https://bioconductor.org/packages/MethylSeekR/ |
| Package Downloads Report | Download Stats |