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MetaboCoreUtils
This is thereleased version of MetaboCoreUtils; for the devel version, seeMetaboCoreUtils.
Core Utils for Metabolomics Data
Bioconductor version: Release (3.22)
MetaboCoreUtils defines metabolomics-related core functionality provided as low-level functions to allow a data structure-independent usage across various R packages. This includes functions to calculate between ion (adduct) and compound mass-to-charge ratios and masses or functions to work with chemical formulas. The package provides also a set of adduct definitions and information on some commercially available internal standard mixes commonly used in MS experiments.
Author: Johannes Rainer [aut, cre]
ORCID: 0000-0002-6977-7147, Michael Witting [aut] ORCID: 0000-0002-1462-4426, Andrea Vicini [aut], Liesa Salzer [ctb] ORCID: 0000-0003-0761-0656, Sebastian Gibb [aut] ORCID: 0000-0001-7406-4443, Michael Stravs [ctb] ORCID: 0000-0002-1426-8572, Roger Gine [aut] ORCID: 0000-0003-0288-9619, Philippine Louail [aut] ORCID: 0009-0007-5429-6846
Maintainer: Johannes Rainer <Johannes.Rainer at eurac.edu>
citation("MetaboCoreUtils")):Installation
To install this package, start R (version "4.5") and enter:
if (!require("BiocManager", quietly = TRUE)) install.packages("BiocManager")BiocManager::install("MetaboCoreUtils")For older versions of R, please refer to the appropriateBioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("MetaboCoreUtils")| Core Utils for Metabolomics Data | HTML | R Script |
| Reference Manual | ||
| NEWS | Text |
Details
| biocViews | Infrastructure,MassSpectrometry,Metabolomics,Software |
| Version | 1.18.1 |
| In Bioconductor since | BioC 3.13 (R-4.1) (4.5 years) |
| License | Artistic-2.0 |
| Depends | R (>= 4.0) |
| Imports | utils,MsCoreUtils,BiocParallel, methods, stats |
| System Requirements | |
| URL | https://github.com/RforMassSpectrometry/MetaboCoreUtils |
| Bug Reports | https://github.com/RforMassSpectrometry/MetaboCoreUtils/issues |
See More
| Suggests | BiocStyle,testthat,knitr,rmarkdown,robustbase |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | CompoundDb,MetaboAnnotation,Spectra,xcms,pubchem.bio |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
FollowInstallation instructions to use this package in your R session.
| Source Package | MetaboCoreUtils_1.18.1.tar.gz |
| Windows Binary (x86_64) | MetaboCoreUtils_1.17.1.zip |
| macOS Binary (x86_64) | MetaboCoreUtils_1.18.1.tgz |
| macOS Binary (arm64) | MetaboCoreUtils_1.18.1.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/MetaboCoreUtils |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/MetaboCoreUtils |
| Bioc Package Browser | https://code.bioconductor.org/browse/MetaboCoreUtils/ |
| Package Short Url | https://bioconductor.org/packages/MetaboCoreUtils/ |
| Package Downloads Report | Download Stats |
| Old Source Packages for BioC 3.22 | Source Archive |