GOstats
This is thereleased version of GOstats; for the devel version, seeGOstats.
Tools for manipulating GO and microarrays
Bioconductor version: Release (3.22)
A set of tools for interacting with GO and microarray data. A variety of basic manipulation tools for graphs, hypothesis testing and other simple calculations.
Author: Robert Gentleman [aut], Seth Falcon [ctb], Robert Castelo [ctb], Sonali Kumari [ctb] (Converted vignettes from Sweave to R Markdown / HTML.), Dennis Ndubi [ctb] (Converted GOstatsHyperG vignette from Sweave to R Markdown / HTML.), Bioconductor Package Maintainer [cre]
Maintainer: Bioconductor Package Maintainer <maintainer at bioconductor.org>
citation("GOstats")):Installation
To install this package, start R (version "4.5") and enter:
if (!require("BiocManager", quietly = TRUE)) install.packages("BiocManager")BiocManager::install("GOstats")For older versions of R, please refer to the appropriateBioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("GOstats")| How To Use GOstats and Category to do Hypergeometric testing with unsupported model organisms | HTML | R Script |
| Hypergeometric Tests Using GOstats | HTML | R Script |
| Visualizing and Distances Using GO | HTML | R Script |
| Reference Manual |
Details
| biocViews | Annotation,GO,GeneExpression,GeneSetEnrichment,GraphAndNetwork,Microarray,MultipleComparison,Pathways,Software |
| Version | 2.76.0 |
| In Bioconductor since | BioC 1.6 (R-2.1) or earlier (> 20.5 years) |
| License | Artistic-2.0 |
| Depends | R (>= 2.10),Biobase(>= 1.15.29),Category(>= 2.43.2),graph |
| Imports | methods, stats, stats4,AnnotationDbi(>= 0.0.89),GO.db(>= 1.13.0),RBGL,annotate(>= 1.13.2),AnnotationForge,Rgraphviz |
| System Requirements | |
| URL |
See More
| Suggests | hgu95av2.db(>= 1.13.0),ALL,multtest,genefilter,RColorBrewer,xtable,SparseM,GSEABase,geneplotter,org.Hs.eg.db,RUnit,BiocGenerics,BiocStyle,knitr |
| Linking To | |
| Enhances | |
| Depends On Me | MineICA |
| Imports Me | affycoretools,attract,categoryCompare,GmicR,ideal,miRLAB,pcaExplorer,scTensor |
| Suggests Me | a4,Category,fastLiquidAssociation,fgga,GSEAlm,interactiveDisplay,MineICA,MLP,qpgraph,RnBeads,safe,maGUI,sand |
| Links To Me | |
| Build Report | Build Report |
Package Archives
FollowInstallation instructions to use this package in your R session.
| Source Package | GOstats_2.76.0.tar.gz |
| Windows Binary (x86_64) | GOstats_2.76.0.zip (64-bit only) |
| macOS Binary (x86_64) | GOstats_2.76.0.tgz |
| macOS Binary (arm64) | GOstats_2.76.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/GOstats |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/GOstats |
| Bioc Package Browser | https://code.bioconductor.org/browse/GOstats/ |
| Package Short Url | https://bioconductor.org/packages/GOstats/ |
| Package Downloads Report | Download Stats |