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Biostrings
This is thereleased version of Biostrings; for the devel version, seeBiostrings.
Efficient manipulation of biological strings
Bioconductor version: Release (3.22)
Memory efficient string containers, string matching algorithms, and other utilities, for fast manipulation of large biological sequences or sets of sequences.
Author: Hervé Pagès [aut, cre], Patrick Aboyoun [aut], Robert Gentleman [aut], Saikat DebRoy [aut], Vince Carey [ctb], Nicolas Delhomme [ctb], Felix Ernst [ctb], Wolfgang Huber [ctb] ('matchprobes' vignette), Beryl Kanali [ctb] (Converted 'MultipleAlignments' vignette from Sweave to RMarkdown), Haleema Khan [ctb] (Converted 'matchprobes' vignette from Sweave to RMarkdown), Aidan Lakshman [ctb], Kieran O'Neill [ctb], Valerie Obenchain [ctb], Marcel Ramos [ctb], Albert Vill [ctb], Jen Wokaty [ctb] (Converted 'matchprobes' vignette from Sweave to RMarkdown), Erik Wright [ctb]
Maintainer: Hervé Pagès <hpages.on.github at gmail.com>
citation("Biostrings")):Installation
To install this package, start R (version "4.5") and enter:
if (!require("BiocManager", quietly = TRUE)) install.packages("BiocManager")BiocManager::install("Biostrings")For older versions of R, please refer to the appropriateBioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("Biostrings")| A short presentation of the basic classes defined in Biostrings 2 | R Script | |
| Biostrings Quick Overview | ||
| Handling probe sequence information | HTML | R Script |
| Multiple Alignments | HTML | R Script |
| Pairwise Sequence Alignments | ||
| Reference Manual | ||
| NEWS | Text |
Details
| biocViews | Alignment,DataImport,DataRepresentation,Genetics,Infrastructure,SequenceMatching,Sequencing,Software |
| Version | 2.78.0 |
| In Bioconductor since | BioC 1.6 (R-2.1) or earlier (> 20.5 years) |
| License | Artistic-2.0 |
| Depends | R (>= 4.1.0),BiocGenerics(>= 0.37.0),S4Vectors(>= 0.27.12),IRanges(>= 2.31.2),XVector(>= 0.37.1),Seqinfo |
| Imports | methods, utils, grDevices, stats,crayon |
| System Requirements | |
| URL | https://bioconductor.org/packages/Biostrings |
| Bug Reports | https://github.com/Bioconductor/Biostrings/issues |
See More
Package Archives
FollowInstallation instructions to use this package in your R session.
| Source Package | Biostrings_2.78.0.tar.gz |
| Windows Binary (x86_64) | Biostrings_2.78.0.zip |
| macOS Binary (x86_64) | Biostrings_2.78.0.tgz |
| macOS Binary (arm64) | Biostrings_2.78.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/Biostrings |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/Biostrings |
| Bioc Package Browser | https://code.bioconductor.org/browse/Biostrings/ |
| Package Short Url | https://bioconductor.org/packages/Biostrings/ |
| Package Downloads Report | Download Stats |