spqn
This is thereleased version of spqn; for the devel version, seespqn.
Spatial quantile normalization
Bioconductor version: Release (3.22)
The spqn package implements spatial quantile normalization (SpQN). This method was developed to remove a mean-correlation relationship in correlation matrices built from gene expression data. It can serve as pre-processing step prior to a co-expression analysis.
Author: Yi Wang [cre, aut], Kasper Daniel Hansen [aut]
Maintainer: Yi Wang <yiwangthu5 at gmail.com>
citation("spqn")):Installation
To install this package, start R (version "4.5") and enter:
if (!require("BiocManager", quietly = TRUE)) install.packages("BiocManager")BiocManager::install("spqn")For older versions of R, please refer to the appropriateBioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("spqn")| spqn User's Guide | HTML | R Script |
| Reference Manual | ||
| NEWS | Text |
Details
| biocViews | GraphAndNetwork,NetworkInference,Normalization,Software |
| Version | 1.22.0 |
| In Bioconductor since | BioC 3.11 (R-4.0) (5.5 years) |
| License | Artistic-2.0 |
| Depends | R (>= 4.0),ggplot2,ggridges,SummarizedExperiment,BiocGenerics |
| Imports | graphics, stats, utils,matrixStats |
| System Requirements | |
| URL | https://github.com/hansenlab/spqn |
| Bug Reports | https://github.com/hansenlab/spqn/issues |
See More
| Suggests | BiocStyle,knitr,rmarkdown, tools,spqnData(>= 0.99.3),RUnit |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
FollowInstallation instructions to use this package in your R session.
| Source Package | spqn_1.22.0.tar.gz |
| Windows Binary (x86_64) | spqn_1.22.0.zip (64-bit only) |
| macOS Binary (x86_64) | spqn_1.22.0.tgz |
| macOS Binary (arm64) | spqn_1.22.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/spqn |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/spqn |
| Bioc Package Browser | https://code.bioconductor.org/browse/spqn/ |
| Package Short Url | https://bioconductor.org/packages/spqn/ |
| Package Downloads Report | Download Stats |