roar
This is thereleased version of roar; for the devel version, seeroar.
Identify differential APA usage from RNA-seq alignments
Bioconductor version: Release (3.22)
Identify preferential usage of APA sites, comparing two biological conditions, starting from known alternative sites and alignments obtained from standard RNA-seq experiments.
Author: Elena Grassi
Maintainer: Elena Grassi <grassi.e at gmail.com>
Citation (from within R, enter
citation("roar")):Installation
To install this package, start R (version "4.5") and enter:
if (!require("BiocManager", quietly = TRUE)) install.packages("BiocManager")BiocManager::install("roar")For older versions of R, please refer to the appropriateBioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("roar")| Identify differential APA usage from RNA-seq alignments | R Script | |
| Reference Manual | ||
| NEWS | Text |
Details
| biocViews | HighThroughputSequencing,RNAseq,Sequencing,Software,Transcription |
| Version | 1.46.0 |
| In Bioconductor since | BioC 2.14 (R-3.1) (11.5 years) |
| License | GPL-3 |
| Depends | R (>= 3.0.1) |
| Imports | methods,BiocGenerics,S4Vectors,IRanges,GenomicRanges,SummarizedExperiment,GenomicAlignments(>= 0.99.4),rtracklayer,GenomeInfoDb |
| System Requirements | |
| URL | https://github.com/vodkatad/roar/ |
See More
| Suggests | RNAseqData.HNRNPC.bam.chr14,testthat |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
FollowInstallation instructions to use this package in your R session.
| Source Package | roar_1.46.0.tar.gz |
| Windows Binary (x86_64) | roar_1.46.0.zip |
| macOS Binary (x86_64) | roar_1.46.0.tgz |
| macOS Binary (arm64) | roar_1.46.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/roar |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/roar |
| Bioc Package Browser | https://code.bioconductor.org/browse/roar/ |
| Package Short Url | https://bioconductor.org/packages/roar/ |
| Package Downloads Report | Download Stats |