bnbc

This is thereleased version of bnbc; for the devel version, seebnbc.

Bandwise normalization and batch correction of Hi-C data

Bioconductor version: Release (3.22)

Tools to normalize (several) Hi-C data from replicates.

Author: Kipper Fletez-Brant [cre, aut], Kasper Daniel Hansen [aut]

Maintainer: Kipper Fletez-Brant <cafletezbrant at gmail.com>

Citation (from within R, entercitation("bnbc")):

To install this package, start R (version "4.5") and enter:

if (!require("BiocManager", quietly = TRUE))    install.packages("BiocManager")BiocManager::install("bnbc")

For older versions of R, please refer to the appropriateBioconductor release.

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("bnbc")

biocViews	HiC,Normalization,Preprocessing,Software
Version	1.32.0
In Bioconductor since	BioC 3.6 (R-3.4) (8 years)
License	Artistic-2.0
Depends	R (>= 3.5.0), methods,BiocGenerics,SummarizedExperiment,GenomicRanges
Imports	Rcpp (>= 0.12.12),IRanges,rhdf5,data.table,Seqinfo,S4Vectors,matrixStats,preprocessCore,sva, parallel,EBImage, utils,HiCBricks
System Requirements
URL	https://github.com/hansenlab/bnbc
Bug Reports	https://github.com/hansenlab/bnbc/issues

Suggests	BiocStyle,knitr,rmarkdown,RUnit,BSgenome.Hsapiens.UCSC.hg19
Linking To	Rcpp
Enhances
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report	Build Report

FollowInstallation instructions to use this package in your R session.

Source Package	bnbc_1.32.0.tar.gz
Windows Binary (x86_64)	bnbc_1.32.0.zip
macOS Binary (x86_64)	bnbc_1.32.0.tgz
macOS Binary (arm64)	bnbc_1.32.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/bnbc
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/bnbc
Bioc Package Browser	https://code.bioconductor.org/browse/bnbc/
Package Short Url	https://bioconductor.org/packages/bnbc/
Package Downloads Report	Download Stats