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gDNAinRNAseqData
This is thereleased version of gDNAinRNAseqData; for the devel version, seegDNAinRNAseqData.
RNA-seq data with different levels of gDNA contamination
Bioconductor version: Release (3.22)
Provides access to BAM files generated from RNA-seq data produced with different levels of gDNA contamination. It currently allows one to download a subset of the data published by Li et al., BMC Genomics, 23:554, 2022. This subset of data is formed by BAM files with about 100,000 alignments with three different levels of gDNA contamination.
Author: Robert Castelo [aut, cre]
ORCID: 0000-0003-2229-4508
Maintainer: Robert Castelo <robert.castelo at upf.edu>
citation("gDNAinRNAseqData")):Installation
To install this package, start R (version "4.5") and enter:
if (!require("BiocManager", quietly = TRUE)) install.packages("BiocManager")BiocManager::install("gDNAinRNAseqData")For older versions of R, please refer to the appropriateBioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("gDNAinRNAseqData")| RNA-seq data with different levels of gDNA contamination | HTML | R Script |
| Reference Manual | ||
| NEWS | Text |
Details
| biocViews | ExperimentData,ExperimentHub,ExpressionData,Homo_sapiens_Data,RNASeqData,SequencingData |
| Version | 1.10.0 |
| License | Artistic-2.0 |
| Depends | R (>= 4.3) |
| Imports | RCurl,XML,ExperimentHub,BiocGenerics,Rsamtools |
| System Requirements | |
| URL | https://github.com/functionalgenomics/gDNAinRNAseqData |
| Bug Reports | https://github.com/functionalgenomics/gDNAinRNAseqData |
See More
| Suggests | BiocStyle,knitr,rmarkdown |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | gDNAx |
| Links To Me | |
| Build Report | Build Report |
Package Archives
FollowInstallation instructions to use this package in your R session.
| Source Package | gDNAinRNAseqData_1.10.0.tar.gz |
| Windows Binary (x86_64) | |
| macOS Binary (x86_64) | |
| macOS Binary (arm64) | |
| Source Repository | git clone https://git.bioconductor.org/packages/gDNAinRNAseqData |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/gDNAinRNAseqData |
| Package Short Url | https://bioconductor.org/packages/gDNAinRNAseqData/ |
| Package Downloads Report | Download Stats |