chipseqDBData

This is thedevelopment version of chipseqDBData; for the stable release version, seechipseqDBData.

Data for the chipseqDB Workflow

DOI: 10.18129/B9.bioc.chipseqDBData

Bioconductor version: Development (3.23)

Sorted and indexed BAM files for ChIP-seq libraries, for use in the chipseqDB workflow. BAM indices are also included.

Author: Aaron Lun [aut, cre]

Maintainer: Aaron Lun <infinite.monkeys.with.keyboards at gmail.com>

Citation (from within R, entercitation("chipseqDBData")):

Installation

To install this package, start R (version "4.6") and enter:

if (!require("BiocManager", quietly = TRUE))    install.packages("BiocManager")# The following initializes usage of Bioc develBiocManager::install(version='devel')BiocManager::install("chipseqDBData")

For older versions of R, please refer to the appropriateBioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("chipseqDBData")

File manifest and statistics	HTML	R Script
Reference Manual	PDF
NEWS	Text

Need some help? Ask on the Bioconductor Support site!

Details

biocViews	ChIPSeqData,ExperimentData,ExperimentHub,SequencingData
Version	1.27.0
License	CC BY 4.0
Depends
Imports	AnnotationHub,ExperimentHub,Rsamtools,S4Vectors
System Requirements
URL

Suggests	knitr,BiocStyle,rmarkdown
Linking To
Enhances
Depends On Me	csawBook
Imports Me
Suggests Me	chipseqDB
Links To Me
Build Report	Build Report

Package Archives

FollowInstallation instructions to use this package in your R session.

Source Package	chipseqDBData_1.27.0.tar.gz
Windows Binary (x86_64)
macOS Binary (x86_64)
macOS Binary (arm64)
Source Repository	git clone https://git.bioconductor.org/packages/chipseqDBData
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/chipseqDBData
Package Short Url	https://bioconductor.org/packages/chipseqDBData/
Package Downloads Report	Download Stats

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