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iSEEu
This is thedevelopment version of iSEEu; for the stable release version, seeiSEEu.
iSEE Universe
Bioconductor version: Development (3.23)
iSEEu (the iSEE universe) contains diverse functionality to extend the usage of the iSEE package, including additional classes for the panels, or modes allowing easy configuration of iSEE applications.
Author: Kevin Rue-Albrecht [aut, cre]
ORCID: 0000-0003-3899-3872, Charlotte Soneson [aut] ORCID: 0000-0003-3833-2169, Federico Marini [aut] ORCID: 0000-0003-3252-7758, Aaron Lun [aut] ORCID: 0000-0002-3564-4813, Michael Stadler [ctb]
Maintainer: Kevin Rue-Albrecht <kevinrue67 at gmail.com>
citation("iSEEu")):Installation
To install this package, start R (version "4.6") and enter:
if (!require("BiocManager", quietly = TRUE)) install.packages("BiocManager")# The following initializes usage of Bioc develBiocManager::install(version='devel')BiocManager::install("iSEEu")For older versions of R, please refer to the appropriateBioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("iSEEu")| Panel universe | HTML | R Script |
| Reference Manual | ||
| NEWS | Text | |
| LICENSE | Text |
Details
| biocViews | CellBasedAssays,Clustering,DimensionReduction,FeatureExtraction,GUI,GeneExpression,ImmunoOncology,SingleCell,Software,Transcription,Transcriptomics,Visualization |
| Version | 1.23.0 |
| In Bioconductor since | BioC 3.11 (R-4.0) (5.5 years) |
| License | MIT + fileLICENSE |
| Depends | iSEE,iSEEhex |
| Imports | methods,S4Vectors,IRanges,shiny,SummarizedExperiment,SingleCellExperiment,ggplot2 (>= 3.4.0),DT, stats,colourpicker,shinyAce |
| System Requirements | |
| URL | https://github.com/iSEE/iSEEu |
| Bug Reports | https://github.com/iSEE/iSEEu/issues |
See More
| Suggests | scRNAseq,scater,scran,airway,edgeR,AnnotationDbi,org.Hs.eg.db,GO.db,KEGGREST,knitr,igraph,rmarkdown,BiocStyle,htmltools,Rtsne,uwot,testthat (>= 2.1.0),covr |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | iSEEfier |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
FollowInstallation instructions to use this package in your R session.
| Source Package | iSEEu_1.23.0.tar.gz |
| Windows Binary (x86_64) | |
| macOS Binary (x86_64) | iSEEu_1.23.0.tgz |
| macOS Binary (arm64) | iSEEu_1.23.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/iSEEu |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/iSEEu |
| Bioc Package Browser | https://code.bioconductor.org/browse/iSEEu/ |
| Package Short Url | https://bioconductor.org/packages/iSEEu/ |
| Package Downloads Report | Download Stats |