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hicVennDiagram
This is thedevelopment version of hicVennDiagram; for the stable release version, seehicVennDiagram.
Venn Diagram for genomic interaction data
Bioconductor version: Development (3.23)
A package to generate high-resolution Venn and Upset plots for genomic interaction data from HiC, ChIA-PET, HiChIP, PLAC-Seq, Hi-TrAC, HiCAR and etc. The package generates plots specifically crafted to eliminate the deceptive visual representation caused by the counts method.
Author: Jianhong Ou [aut, cre]
ORCID: 0000-0002-8652-2488
Maintainer: Jianhong Ou <jou at morgridge.org>
citation("hicVennDiagram")):Installation
To install this package, start R (version "4.6") and enter:
if (!require("BiocManager", quietly = TRUE)) install.packages("BiocManager")# The following initializes usage of Bioc develBiocManager::install(version='devel')BiocManager::install("hicVennDiagram")For older versions of R, please refer to the appropriateBioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("hicVennDiagram")| hicVennDiagram Vignette: overview | HTML | R Script |
| Reference Manual | ||
| NEWS | Text |
Details
| biocViews | DNA3DStructure,HiC,Software,Visualization |
| Version | 1.9.0 |
| In Bioconductor since | BioC 3.18 (R-4.3) (2 years) |
| License | GPL-3 |
| Depends | R (>= 4.3.0) |
| Imports | Seqinfo,GenomicRanges,IRanges,InteractionSet,rtracklayer,ggplot2,ComplexUpset,reshape2,eulerr,S4Vectors, methods, utils,htmlwidgets,svglite |
| System Requirements | |
| URL | https://github.com/jianhong/hicVennDiagram |
| Bug Reports | https://github.com/jianhong/hicVennDiagram/issues |
See More
| Suggests | BiocStyle,knitr,rmarkdown,testthat,ChIPpeakAnno, grid,TxDb.Hsapiens.UCSC.hg38.knownGene |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
FollowInstallation instructions to use this package in your R session.
| Source Package | hicVennDiagram_1.9.0.tar.gz |
| Windows Binary (x86_64) | hicVennDiagram_1.9.0.zip (64-bit only) |
| macOS Binary (x86_64) | |
| macOS Binary (arm64) | hicVennDiagram_1.9.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/hicVennDiagram |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/hicVennDiagram |
| Bioc Package Browser | https://code.bioconductor.org/browse/hicVennDiagram/ |
| Package Short Url | https://bioconductor.org/packages/hicVennDiagram/ |
| Package Downloads Report | Download Stats |