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GenomicTuples
This is thedevelopment version of GenomicTuples; for the stable release version, seeGenomicTuples.
Representation and Manipulation of Genomic Tuples
Bioconductor version: Development (3.23)
GenomicTuples defines general purpose containers for storing genomic tuples. It aims to provide functionality for tuples of genomic co-ordinates that are analogous to those available for genomic ranges in the GenomicRanges Bioconductor package.
Author: Peter Hickey [aut, cre], Marcin Cieslik [ctb], Hervé Pagès [ctb]
Maintainer: Peter Hickey <peter.hickey at gmail.com>
citation("GenomicTuples")):Installation
To install this package, start R (version "4.6") and enter:
if (!require("BiocManager", quietly = TRUE)) install.packages("BiocManager")# The following initializes usage of Bioc develBiocManager::install(version='devel')BiocManager::install("GenomicTuples")For older versions of R, please refer to the appropriateBioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("GenomicTuples")| GenomicTuplesIntroduction | HTML | R Script |
| Reference Manual | ||
| NEWS | Text |
Details
| biocViews | DataRepresentation,Infrastructure,Sequencing,Software |
| Version | 1.45.0 |
| In Bioconductor since | BioC 3.0 (R-3.1) (11 years) |
| License | Artistic-2.0 |
| Depends | R (>= 4.0),GenomicRanges(>= 1.37.4),Seqinfo,S4Vectors(>= 0.17.25) |
| Imports | methods,BiocGenerics(>= 0.21.2),Rcpp (>= 0.11.2),IRanges(>= 2.19.13),data.table, stats4, stats, utils |
| System Requirements | |
| URL | www.github.com/PeteHaitch/GenomicTuples |
| Bug Reports | https://github.com/PeteHaitch/GenomicTuples/issues |
See More
| Suggests | testthat,knitr,BiocStyle,rmarkdown,covr,GenomicAlignments,Biostrings,GenomeInfoDb |
| Linking To | Rcpp |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
FollowInstallation instructions to use this package in your R session.
| Source Package | GenomicTuples_1.45.0.tar.gz |
| Windows Binary (x86_64) | GenomicTuples_1.45.0.zip |
| macOS Binary (x86_64) | |
| macOS Binary (arm64) | GenomicTuples_1.45.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/GenomicTuples |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/GenomicTuples |
| Bioc Package Browser | https://code.bioconductor.org/browse/GenomicTuples/ |
| Package Short Url | https://bioconductor.org/packages/GenomicTuples/ |
| Package Downloads Report | Download Stats |