notameStats

This is thedevelopment version of notameStats; for the stable release version, seenotameStats.

Workflow for non-targeted LC-MS metabolic profiling

DOI: 10.18129/B9.bioc.notameStats

Bioconductor version: Development (3.23)

Provides univariate and multivariate statistics for feature prioritization in untargeted LC-MS metabolomics research.

Author: Anton Klåvus [aut, cph] ORCID: 0000-0003-2612-0230, Jussi Paananen [aut, cph] ORCID: 0000-0001-5100-4907, Oskari Timonen [aut, cph] ORCID: 0000-0002-6317-6260, Atte Lihtamo [aut], Vilhelm Suksi [aut, cre] ORCID: 0009-0005-1108-518X, Retu Haikonen [aut] ORCID: 0000-0003-0830-3850, Leo Lahti [aut] ORCID: 0000-0001-5537-637X, Kati Hanhineva [aut] ORCID: 0000-0001-6834-7375, Ville Koistinen [ctb] ORCID: 0000-0003-1587-8361, Olli Kärkkäinen [ctb] ORCID: 0000-0003-0825-4956, Artur Sannikov [ctb]

Maintainer: Vilhelm Suksi <vksuks at utu.fi>

Citation (from within R, entercitation("notameStats")):

Installation

To install this package, start R (version "4.6") and enter:

if (!require("BiocManager", quietly = TRUE))    install.packages("BiocManager")# The following initializes usage of Bioc develBiocManager::install(version='devel')BiocManager::install("notameStats")

For older versions of R, please refer to the appropriateBioconductor release.

Documentation


Reference Manual	PDF

Need some help? Ask on the Bioconductor Support site!

Details

biocViews	BatchEffect,BiomedicalInformatics,DataImport,MassSpectrometry,Metabolomics,MultipleComparison,Normalization,Preprocessing,QualityControl,Software,Visualization
Version	1.1.0
In Bioconductor since	BioC 3.22 (R-4.5) (< 6 months)
License	MIT + file LICENSE
Depends	R (>= 4.5.0),SummarizedExperiment
Imports	BiocGenerics,BiocParallel,broom,dplyr, methods,notame, stats,tibble,tidyr, utils
System Requirements
URL	https://github.com/hanhineva-lab/notameStats
Bug Reports	https://github.com/hanhineva-lab/notameStats/issues

Suggests	BiocStyle,car,knitr,lmerTest,mixOmics,MuMIn,MUVR2,notameViz,PERMANOVA,PK,randomForest,rmcorr,testthat
Linking To
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Depends On Me
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Build Report	Build Report

Package Archives

FollowInstallation instructions to use this package in your R session.

Source Package
Windows Binary (x86_64)
macOS Binary (x86_64)
macOS Binary (arm64)
Source Repository	git clone https://git.bioconductor.org/packages/notameStats
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/notameStats
Package Short Url	https://bioconductor.org/packages/notameStats/
Package Downloads Report	Download Stats

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