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globalSeq
This is thedevelopment version of globalSeq; for the stable release version, seeglobalSeq.
Global Test for Counts
Bioconductor version: Development (3.23)
The method may be conceptualised as a test of overall significance in regression analysis, where the response variable is overdispersed and the number of explanatory variables exceeds the sample size. Useful for testing for association between RNA-Seq and high-dimensional data.
Author: Armin Rauschenberger [aut, cre]
Maintainer: Armin Rauschenberger <armin.rauschenberger at uni.lu>
citation("globalSeq")):Installation
To install this package, start R (version "4.6") and enter:
if (!require("BiocManager", quietly = TRUE)) install.packages("BiocManager")# The following initializes usage of Bioc develBiocManager::install(version='devel')BiocManager::install("globalSeq")For older versions of R, please refer to the appropriateBioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("globalSeq")| article frame | HTML | |
| vignette frame | HTML | |
| vignette source | R Script | |
| Reference Manual | ||
| NEWS | Text |
Details
| biocViews | DifferentialExpression,DimensionReduction,ExomeSeq,ExonArray,GeneExpression,GenomeWideAssociation,MultipleComparison,RNASeq,Regression,Sequencing,Software,Transcriptomics,WholeGenome,miRNA |
| Version | 1.39.0 |
| In Bioconductor since | BioC 3.3 (R-3.3) (9.5 years) |
| License | GPL-3 |
| Depends | R (>= 3.0.0) |
| Imports | |
| System Requirements | |
| URL | https://github.com/rauschenberger/globalSeq |
| Bug Reports | https://github.com/rauschenberger/globalSeq/issues |
See More
| Suggests | knitr,testthat,SummarizedExperiment,S4Vectors |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
FollowInstallation instructions to use this package in your R session.
| Source Package | globalSeq_1.39.0.tar.gz |
| Windows Binary (x86_64) | globalSeq_1.39.0.zip |
| macOS Binary (x86_64) | globalSeq_1.39.0.tgz |
| macOS Binary (arm64) | globalSeq_1.39.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/globalSeq |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/globalSeq |
| Bioc Package Browser | https://code.bioconductor.org/browse/globalSeq/ |
| Package Short Url | https://bioconductor.org/packages/globalSeq/ |
| Package Downloads Report | Download Stats |