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epistasisGA
This is thedevelopment version of epistasisGA; for the stable release version, seeepistasisGA.
An R package to identify multi-snp effects in nuclear family studies using the GADGETS method
Bioconductor version: Development (3.23)
This package runs the GADGETS method to identify epistatic effects in nuclear family studies. It also provides functions for permutation-based inference and graphical visualization of the results.
Author: Michael Nodzenski [aut, cre], Juno Krahn [ctb]
Maintainer: Michael Nodzenski <michael.nodzenski at gmail.com>
citation("epistasisGA")):Installation
To install this package, start R (version "4.6") and enter:
if (!require("BiocManager", quietly = TRUE)) install.packages("BiocManager")# The following initializes usage of Bioc develBiocManager::install(version='devel')BiocManager::install("epistasisGA")For older versions of R, please refer to the appropriateBioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("epistasisGA")| Detecting Maternal-SNP Interactions | HTML | R Script |
| E-GADGETS | HTML | R Script |
| GADGETS | HTML | R Script |
| Reference Manual | ||
| NEWS | Text |
Details
| biocViews | GeneticVariability,Genetics,SNP,Software |
| Version | 1.13.0 |
| In Bioconductor since | BioC 3.16 (R-4.2) (3 years) |
| License | GPL-3 |
| Depends | R (>= 4.2) |
| Imports | BiocParallel,data.table,matrixStats, stats,survival,igraph,batchtools,qgraph, grDevices, parallel,ggplot2, grid,bigmemory, graphics, utils |
| System Requirements | |
| URL | https://github.com/mnodzenski/epistasisGA |
| Bug Reports | https://github.com/mnodzenski/epistasisGA/issues |
See More
| Suggests | BiocStyle,knitr,rmarkdown,magrittr,kableExtra,testthat (>= 3.0.0) |
| Linking To | Rcpp,RcppArmadillo,BH,bigmemory |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
FollowInstallation instructions to use this package in your R session.
| Source Package | epistasisGA_1.13.0.tar.gz |
| Windows Binary (x86_64) | epistasisGA_1.13.0.zip (64-bit only) |
| macOS Binary (x86_64) | epistasisGA_1.13.0.tgz |
| macOS Binary (arm64) | epistasisGA_1.13.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/epistasisGA |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/epistasisGA |
| Bioc Package Browser | https://code.bioconductor.org/browse/epistasisGA/ |
| Package Short Url | https://bioconductor.org/packages/epistasisGA/ |
| Package Downloads Report | Download Stats |