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eiR
This is thedevelopment version of eiR; for the stable release version, seeeiR.
Accelerated similarity searching of small molecules
DOI: 10.18129/B9.bioc.eiR
Bioconductor version: Development (3.23)
The eiR package provides utilities for accelerated structure similarity searching of very large small molecule data sets using an embedding and indexing approach.
Author: Kevin Horan, Yiqun Cao and Tyler Backman
Maintainer: Thomas Girke <thomas.girke at ucr.edu>
Citation (from within R, enter
citation("eiR")):Installation
To install this package, start R (version "4.6") and enter:
if (!require("BiocManager", quietly = TRUE)) install.packages("BiocManager")# The following initializes usage of Bioc develBiocManager::install(version='devel')BiocManager::install("eiR")For older versions of R, please refer to the appropriateBioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("eiR")| eiR: Accelerated Similarity Searching of Small Molecules | HTML | R Script |
| Reference Manual | ||
| NEWS | Text | |
| INSTALL | Text | |
| LICENSE | Text |
Details
| biocViews | BiomedicalInformatics,CellBasedAssays,Cheminformatics,Clustering,DataImport,Infrastructure,Metabolomics,MicrotitrePlateAssay,Pharmacogenetics,Pharmacogenomics,Proteomics,Software,Visualization |
| Version | 1.51.0 |
| In Bioconductor since | BioC 2.12 (R-3.0) (12.5 years) |
| License | Artistic-2.0 |
| Depends | R (>= 2.10.0),ChemmineR(>= 2.15.15), methods,DBI |
| Imports | snow, tools,snowfall,RUnit, methods,ChemmineR,RCurl,digest,BiocGenerics,RcppAnnoy (>= 0.0.9) |
| System Requirements | |
| URL | https://github.com/girke-lab/eiR |
See More
| Suggests | BiocStyle,knitcitations,knitr,knitrBootstrap,rmarkdown,RSQLite,codetools |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
FollowInstallation instructions to use this package in your R session.
| Source Package | eiR_1.51.0.tar.gz |
| Windows Binary (x86_64) | |
| macOS Binary (x86_64) | eiR_1.51.0.tgz |
| macOS Binary (arm64) | eiR_1.51.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/eiR |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/eiR |
| Bioc Package Browser | https://code.bioconductor.org/browse/eiR/ |
| Package Short Url | https://bioconductor.org/packages/eiR/ |
| Package Downloads Report | Download Stats |