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RolDE
This is thedevelopment version of RolDE; for the stable release version, seeRolDE.
RolDE: Robust longitudinal Differential Expression
Bioconductor version: Development (3.23)
RolDE detects longitudinal differential expression between two conditions in noisy high-troughput data. Suitable even for data with a moderate amount of missing values.RolDE is a composite method, consisting of three independent modules with different approaches to detecting longitudinal differential expression. The combination of these diverse modules allows RolDE to robustly detect varying differences in longitudinal trends and expression levels in diverse data types and experimental settings.
Author: Tommi Valikangas [aut], Medical Bioinformatics Centre [cre]
Maintainer: Medical Bioinformatics Centre <mbc at utu.fi>
citation("RolDE")):Installation
To install this package, start R (version "4.6") and enter:
if (!require("BiocManager", quietly = TRUE)) install.packages("BiocManager")# The following initializes usage of Bioc develBiocManager::install(version='devel')BiocManager::install("RolDE")For older versions of R, please refer to the appropriateBioconductor release.
Documentation
| Reference Manual |
Details
| biocViews | DifferentialExpression,Proteomics,Regression,Software,StatisticalMethod,TimeCourse |
| Version | 1.15.0 |
| In Bioconductor since | BioC 3.15 (R-4.2) (3.5 years) |
| License | GPL-3 |
| Depends | R (>= 4.2.0) |
| Imports | stats, methods,ROTS,matrixStats,foreach, parallel,doParallel,doRNG,rngtools,SummarizedExperiment,nlme,qvalue, grDevices, graphics, utils |
| System Requirements | |
| URL | https://github.com/elolab/RolDE |
| Bug Reports | https://github.com/elolab/RolDE/issues |
See More
| Suggests | knitr,printr,rmarkdown,testthat |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
FollowInstallation instructions to use this package in your R session.
| Source Package | |
| Windows Binary (x86_64) | |
| macOS Binary (x86_64) | RolDE_1.15.0.tgz |
| macOS Binary (arm64) | RolDE_1.15.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/RolDE |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/RolDE |
| Bioc Package Browser | https://code.bioconductor.org/browse/RolDE/ |
| Package Short Url | https://bioconductor.org/packages/RolDE/ |
| Package Downloads Report | Download Stats |