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Melissa
This is thedevelopment version of Melissa; for the stable release version, seeMelissa.
Bayesian clustering and imputationa of single cell methylomes
Bioconductor version: Development (3.23)
Melissa is a Baysian probabilistic model for jointly clustering and imputing single cell methylomes. This is done by taking into account local correlations via a Generalised Linear Model approach and global similarities using a mixture modelling approach.
Author: C. A. Kapourani [aut, cre]
Maintainer: C. A. Kapourani <kapouranis.andreas at gmail.com>
Citation (from within R, enter
citation("Melissa")):Installation
To install this package, start R (version "4.6") and enter:
if (!require("BiocManager", quietly = TRUE)) install.packages("BiocManager")# The following initializes usage of Bioc develBiocManager::install(version='devel')BiocManager::install("Melissa")For older versions of R, please refer to the appropriateBioconductor release.
Documentation
| Reference Manual |
Details
| biocViews | Bayesian,Clustering,Coverage,DNAMethylation,Epigenetics,FeatureExtraction,GeneExpression,GeneRegulation,Genetics,ImmunoOncology,KEGG,RNASeq,Regression,Sequencing,SingleCell,Software |
| Version | 1.27.0 |
| In Bioconductor since | BioC 3.9 (R-3.6) (6.5 years) |
| License | GPL-3 | file LICENSE |
| Depends | R (>= 3.5.0),BPRMeth,GenomicRanges |
| Imports | data.table, parallel,ROCR,matrixcalc,mclust,ggplot2,doParallel,foreach,MCMCpack,cowplot,magrittr,mvtnorm,truncnorm,assertthat,BiocStyle, stats, utils |
| System Requirements | |
| URL |
See More
| Suggests | testthat,knitr,rmarkdown |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
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| Build Report | Build Report |
Package Archives
FollowInstallation instructions to use this package in your R session.
| Source Package | |
| Windows Binary (x86_64) | |
| macOS Binary (x86_64) | |
| macOS Binary (arm64) | |
| Source Repository | git clone https://git.bioconductor.org/packages/Melissa |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/Melissa |
| Package Short Url | https://bioconductor.org/packages/Melissa/ |
| Package Downloads Report | Download Stats |