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scpdata
This is thedevelopment version of scpdata; for the stable release version, seescpdata.
Single-Cell Proteomics Data Package
Bioconductor version: Development (3.23)
The package disseminates mass spectrometry (MS)-based single-cell proteomics (SCP) datasets. The data were collected from published work and formatted using the `scp` data structure. The data sets contain quantitative information at spectrum, peptide and/or protein level for single cells or minute sample amounts.
Author: Christophe Vanderaa [aut, cre]
ORCID: 0000-0001-7443-5427, Laurent Gatto [aut] ORCID: 0000-0002-1520-2268, Enes Ayar [dtc] ORCID: 0000-0001-8881-9800, Samuel Grégoire [dtc] ORCID: 0000-0002-0900-7677
Maintainer: Christophe Vanderaa <christophe.vanderaa at uclouvain.be>
citation("scpdata")):Installation
To install this package, start R (version "4.6") and enter:
if (!require("BiocManager", quietly = TRUE)) install.packages("BiocManager")# The following initializes usage of Bioc develBiocManager::install(version='devel')BiocManager::install("scpdata")For older versions of R, please refer to the appropriateBioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("scpdata")| Contribution guidelines | HTML | R Script |
| Data Package for Single Cell Proteomics | HTML | R Script |
| Reference Manual | ||
| NEWS | Text |
Details
| biocViews | ExperimentData,ExperimentHub,ExpressionData,MassSpectrometryData,PackageTypeData,Proteome,ReproducibleResearch,SingleCellData |
| Version | 1.19.0 |
| License | GPL-2 |
| Depends | R (>= 4.2.0),QFeatures,ExperimentHub |
| Imports | utils,AnnotationHub,SingleCellExperiment,S4Vectors |
| System Requirements | |
| URL |
See More
| Suggests | scp,magrittr,dplyr,knitr,BiocStyle,BiocCheck,rmarkdown,testthat |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | scp |
| Links To Me | |
| Build Report | Build Report |
Package Archives
FollowInstallation instructions to use this package in your R session.
| Source Package | scpdata_1.19.0.tar.gz |
| Windows Binary (x86_64) | |
| macOS Binary (x86_64) | |
| macOS Binary (arm64) | |
| Source Repository | git clone https://git.bioconductor.org/packages/scpdata |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/scpdata |
| Package Short Url | https://bioconductor.org/packages/scpdata/ |
| Package Downloads Report | Download Stats |