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org.Hs.eg.db

This is thedevelopment version of org.Hs.eg.db; for the stable release version, seeorg.Hs.eg.db.

Genome wide annotation for Human

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DOI: 10.18129/B9.bioc.org.Hs.eg.db


Bioconductor version: Development (3.23)

Genome wide annotation for Human, primarily based on mapping using Entrez Gene identifiers.

Author: Marc Carlson

Maintainer: Bioconductor Package Maintainer <maintainer at bioconductor.org>

Citation (from within R, entercitation("org.Hs.eg.db")):

Installation

To install this package, start R (version "4.6") and enter:

if (!require("BiocManager", quietly = TRUE))    install.packages("BiocManager")# The following initializes usage of Bioc develBiocManager::install(version='devel')BiocManager::install("org.Hs.eg.db")

For older versions of R, please refer to the appropriateBioconductor release.

Documentation

Reference ManualPDF

Need some help? Ask on the Bioconductor Support site!

Details

biocViewsAnnotationData,Homo_sapiens,OrgDb,humanLLMappings
Version3.22.0
LicenseArtistic-2.0
DependsR (>= 2.7.0), methods,AnnotationDbi(>= 1.71.1)
Imports
System Requirements
URL
See More
SuggestsDBI,annotate,RUnit
Linking To
Enhances
Depends On MeCoCiteStats,GSReg,KEGGlincs,signatureSearch,tRanslatome,clariomdhumanprobeset.db,clariomdhumantranscriptcluster.db,clariomshumanhttranscriptcluster.db,clariomshumantranscriptcluster.db,FDb.InfiniumMethylation.hg18,FDb.InfiniumMethylation.hg19,GGHumanMethCancerPanelv1.db,h10kcod.db,h20kcod.db,hcg110.db,hgfocus.db,hgu133a.db,hgu133a2.db,hgu133b.db,hgu133plus2.db,hgu219.db,hgu95a.db,hgu95av2.db,hgu95b.db,hgu95c.db,hgu95d.db,hgu95e.db,hguatlas13k.db,hgubeta7.db,hguDKFZ31.db,hgug4100a.db,hgug4101a.db,hgug4110b.db,hgug4111a.db,hgug4112a.db,hgug4845a.db,hguqiagenv3.db,hi16cod.db,Homo.sapiens,hs25kresogen.db,Hs6UG171.db,HsAgilentDesign026652.db,hta20probeset.db,hta20transcriptcluster.db,hthgu133a.db,hthgu133b.db,hthgu133plusa.db,hthgu133plusb.db,hthgu133pluspm.db,hu35ksuba.db,hu35ksubb.db,hu35ksubc.db,hu35ksubd.db,hu6800.db,huex10stprobeset.db,huex10sttranscriptcluster.db,hugene10stprobeset.db,hugene10sttranscriptcluster.db,hugene11stprobeset.db,hugene11sttranscriptcluster.db,hugene20stprobeset.db,hugene20sttranscriptcluster.db,hugene21stprobeset.db,hugene21sttranscriptcluster.db,HuO22.db,hwgcod.db,IlluminaHumanMethylation27k.db,illuminaHumanv1.db,illuminaHumanv2.db,illuminaHumanv2BeadID.db,illuminaHumanv3.db,illuminaHumanv4.db,illuminaHumanWGDASLv3.db,illuminaHumanWGDASLv4.db,JazaeriMetaData.db,LAPOINTE.db,lumiHumanAll.db,Norway981.db,nugohs1a520180.db,OperonHumanV3.db,PartheenMetaData.db,pedbarrayv10.db,pedbarrayv9.db,POCRCannotation.db,Roberts2005Annotation.db,SHDZ.db,u133x3p.db,rnaseqGene,variants, OSCA.workflows
Imports MeAPL,artMS,attract,bioCancer,BioNAR,CaMutQC,CBNplot,cellity,chimeraviz,chipenrich,consICA,debrowser,DegCre,EasyCellType,EGSEA,funOmics,GDCRNATools,geneAttribution,GmicR,GOpro,goSorensen,mastR,MCbiclust,MetaboSignal,methylGSA,mirIntegrator,miRLAB,miRSM,miRspongeR,missMethyl,mitology,Moonlight2R,MOSClip,mslp,OutSplice,PanomiR,pathview,REMP,rGREAT,rgsepd,RNAAgeCalc,rTRMui,scafari,scPipe,signifinder,SMITE,sSNAPPY,SubCellBarCode,SVMDO,TFEA.ChIP,TFutils,uncoverappLib,GenomicState,SomaScan.db,msigdb,recountWorkflow,aliases2entrez,BiSEp,convertid,DIscBIO,driveR,g3viz,HiCociety,ICDS,jetset,netgsa,PANACEA,pathfindR,PathwayVote,PMAPscore,prioGene,ssdGSA,SurprisalAnalysis,WayFindR,XYomics
Suggests MeAllelicImbalance,annotate,AnnotationDbi,AnnotationFilter,AnnotationForge,annotatr,appreci8R,ASURAT,autonomics,BioCor,BiocSet,BioQC,borealis,bumphunter,categoryCompare,CeTF,ChIPpeakAnno,ChIPseeker,clusterProfiler,cnvGSA,CRISPRseek,DeeDeeExperiment,derfinderPlot,dmGsea,dmrseq,DOSE,edgeR,EnhancedVolcano,enhancerHomologSearch,enrichplot,EpiCompare,EpiMix,FELLA,fishpond,GA4GHclient,GA4GHshiny,gage,gCrisprTools,GeDi,GeneNetworkBuilder,GeneTonic,geneXtendeR,GenomicFeatures,GenomicInteractionNodes,geomeTriD,GeoTcgaData,gg4way,globaltest,goProfiles,GOSemSim,goseq,GOstats,GRaNIE,graphite,groHMM,GSAR,GSEABase,GSVA,GUIDEseq,gwascat,hpar,ideal,InteractiveComplexHeatmap,iSEEde,iSEEpathways,iSEEu,karyoploteR,KEGGgraph,limma,MesKit,MIRit,miRNAtap,MLP,mogsa,mosdef,multiGSEA,NanoMethViz,NetActivity,NetSAM,ontoProc,oppar,OUTRIDER,pageRank,pathlinkR,pcaExplorer,phantasus,plotgardener,ProteoDisco,PureCN,quantiseqr,R3CPET,ramr,ReactomePA,recount,RFLOMICS,rigvf,RnBeads,rrvgo,RTopper,rtracklayer,rTRM,scde,scGPS,scGraphVerse,scmeth,simona,SingleCellAlleleExperiment,SPICEY,TCGAutils,tenXplore,tidybulk,trackViewer,tricycle,UMI4Cats,VariantFiltering,vissE,wiggleplotr,BloodCancerMultiOmics2017,chipenrich.data,prostateCancerTaylor,RforProteomics,BaseSet, bulkAnalyseR,conos,easylabel,goat,ivolcano,kernscr,metaMA,pagoda2,pQTLdata,protr,RCPA,rliger,SCpubr,SNPassoc,WGCNA
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FollowInstallation instructions to use this package in your R session.

Source Packageorg.Hs.eg.db_3.22.0.tar.gz
Windows Binary (x86_64)
macOS Binary (x86_64)
macOS Binary (arm64)
Package Short Urlhttps://bioconductor.org/packages/org.Hs.eg.db/
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