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tripr
This is thedevelopment version of tripr; for the stable release version, seetripr.
T-cell Receptor/Immunoglobulin Profiler (TRIP)
Bioconductor version: Development (3.23)
TRIP is a software framework that provides analytics services on antigen receptor (B cell receptor immunoglobulin, BcR IG | T cell receptor, TR) gene sequence data. It is a web application written in R Shiny. It takes as input the output files of the IMGT/HighV-Quest tool. Users can select to analyze the data from each of the input samples separately, or the combined data files from all samples and visualize the results accordingly.
Author: Maria Th. Kotouza [aut], Katerina Gemenetzi [aut], Chrysi Galigalidou [aut], Elisavet Vlachonikola [aut], Nikolaos Pechlivanis [cre], Andreas Agathangelidis [aut], Raphael Sandaltzopoulos [aut], Pericles A. Mitkas [aut], Kostas Stamatopoulos [aut], Anastasia Chatzidimitriou [aut], Fotis E. Psomopoulos [aut], Iason Ofeidis [aut], Aspasia Orfanou [aut]
Maintainer: Nikolaos Pechlivanis <inab.bioinformatics at lists.certh.gr>
citation("tripr")):Installation
To install this package, start R (version "4.6") and enter:
if (!require("BiocManager", quietly = TRUE)) install.packages("BiocManager")# The following initializes usage of Bioc develBiocManager::install(version='devel')BiocManager::install("tripr")For older versions of R, please refer to the appropriateBioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("tripr")| tripr User Guide | HTML | R Script |
| Reference Manual | ||
| NEWS | Text | |
| LICENSE | Text |
Details
| biocViews | BatchEffect,GeneExpression,ImmunoOncology,MultipleComparison,Software,TargetedResequencing |
| Version | 1.17.0 |
| In Bioconductor since | BioC 3.14 (R-4.1) (4 years) |
| License | MIT + fileLICENSE |
| Depends | R (>= 4.1.0),shiny (>= 1.6.0),shinyBS |
| Imports | shinyjs,shinyFiles,plyr,data.table,DT,stringr,stringdist,plot3D,gridExtra,RColorBrewer,plotly,dplyr,config (>= 0.3.1),golem (>= 0.3.1), methods, grDevices, graphics, stats, utils,vegan |
| System Requirements | |
| URL | https://github.com/BiodataAnalysisGroup/tripr |
| Bug Reports | https://github.com/BiodataAnalysisGroup/tripr/issues |
See More
| Suggests | BiocGenerics,shinycssloaders,tidyverse,BiocManager,Biostrings,xtable,rlist,motifStack,knitr,rmarkdown,testthat (>= 3.0.0),fs,BiocStyle,RefManageR,biocthis,pryr |
| Linking To | |
| Enhances | parallel |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
FollowInstallation instructions to use this package in your R session.
| Source Package | tripr_1.17.0.tar.gz |
| Windows Binary (x86_64) | tripr_1.17.0.zip |
| macOS Binary (x86_64) | tripr_1.17.0.tgz |
| macOS Binary (arm64) | tripr_1.17.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/tripr |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/tripr |
| Bioc Package Browser | https://code.bioconductor.org/browse/tripr/ |
| Package Short Url | https://bioconductor.org/packages/tripr/ |
| Package Downloads Report | Download Stats |