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cellbaseR
This is thedevelopment version of cellbaseR; for the stable release version, seecellbaseR.
Querying annotation data from the high performance Cellbase web
Bioconductor version: Development (3.23)
This R package makes use of the exhaustive RESTful Web service API that has been implemented for the Cellabase database. It enable researchers to query and obtain a wealth of biological information from a single database saving a lot of time. Another benefit is that researchers can easily make queries about different biological topics and link all this information together as all information is integrated.
Author: Mohammed OE Abdallah
Maintainer: Mohammed OE Abdallah <melsiddieg at gmail.com>
citation("cellbaseR")):Installation
To install this package, start R (version "4.6") and enter:
if (!require("BiocManager", quietly = TRUE)) install.packages("BiocManager")# The following initializes usage of Bioc develBiocManager::install(version='devel')BiocManager::install("cellbaseR")For older versions of R, please refer to the appropriateBioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("cellbaseR")| Simplifying Genomic Annotations in R | HTML | R Script |
| Reference Manual | ||
| NEWS | Text |
Details
| biocViews | Annotation,Software,VariantAnnotation |
| Version | 1.35.0 |
| In Bioconductor since | BioC 3.5 (R-3.4) (8.5 years) |
| License | Apache License (== 2.0) |
| Depends | R (>= 3.4) |
| Imports | methods,jsonlite,httr,data.table,pbapply,tidyr,R.utils,Rsamtools,BiocParallel,foreach, utils, parallel,doParallel |
| System Requirements | |
| URL | https://github.com/melsiddieg/cellbaseR |
See More
| Suggests | BiocStyle,knitr,rmarkdown,Gviz,VariantAnnotation |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
FollowInstallation instructions to use this package in your R session.
| Source Package | cellbaseR_1.35.0.tar.gz |
| Windows Binary (x86_64) | cellbaseR_1.35.0.zip (64-bit only) |
| macOS Binary (x86_64) | |
| macOS Binary (arm64) | cellbaseR_1.35.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/cellbaseR |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/cellbaseR |
| Bioc Package Browser | https://code.bioconductor.org/browse/cellbaseR/ |
| Package Short Url | https://bioconductor.org/packages/cellbaseR/ |
| Package Downloads Report | Download Stats |