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mitology
This is thedevelopment version of mitology; for the stable release version, seemitology.
Study of mitochondrial activity from RNA-seq data
Bioconductor version: Development (3.23)
mitology allows to study the mitochondrial activity throught high-throughput RNA-seq data. It is based on a collection of genes whose proteins localize in to the mitochondria. From these, mitology provides a reorganization of the pathways related to mitochondria activity from Reactome and Gene Ontology. Further a ready-to-use implementation of MitoCarta3.0 pathways is included.
Author: Stefania Pirrotta [cre, aut]
ORCID: 0009-0004-0030-217X, Enrica Calura [aut, fnd] ORCID: 0000-0001-8463-2432
Maintainer: Stefania Pirrotta <stefania.pirrotta at unipd.it>
citation("mitology")):Installation
To install this package, start R (version "4.6") and enter:
if (!require("BiocManager", quietly = TRUE)) install.packages("BiocManager")# The following initializes usage of Bioc develBiocManager::install(version='devel')BiocManager::install("mitology")For older versions of R, please refer to the appropriateBioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("mitology")| mitology vignette | HTML | R Script |
| Reference Manual | ||
| NEWS | Text |
Details
| biocViews | GO,GeneExpression,Pathways,RNASeq,Reactome,SingleCell,Software,Spatial,Visualization |
| Version | 1.3.0 |
| In Bioconductor since | BioC 3.21 (R-4.5) (0.5 years) |
| License | AGPL-3 |
| Depends | R (>= 4.5.0) |
| Imports | AnnotationDbi,ape,circlize,clusterProfiler,ComplexHeatmap,ggplot2,ggtree,magrittr,org.Hs.eg.db,ReactomePA,scales |
| System Requirements | |
| URL | https://github.com/CaluraLab/mitology |
| Bug Reports | https://github.com/CaluraLab/mitology/issues |
See More
| Suggests | Biobase,BiocStyle,GSVA, methods,rmarkdown,knitr,SummarizedExperiment,testthat |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
FollowInstallation instructions to use this package in your R session.
| Source Package | mitology_1.3.0.tar.gz |
| Windows Binary (x86_64) | mitology_1.3.0.zip |
| macOS Binary (x86_64) | mitology_1.3.0.tgz |
| macOS Binary (arm64) | mitology_1.3.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/mitology |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/mitology |
| Bioc Package Browser | https://code.bioconductor.org/browse/mitology/ |
| Package Short Url | https://bioconductor.org/packages/mitology/ |
| Package Downloads Report | Download Stats |