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iSEEhub
This is thedevelopment version of iSEEhub; for the stable release version, seeiSEEhub.
iSEE for the Bioconductor ExperimentHub
Bioconductor version: Development (3.23)
This package defines a custom landing page for an iSEE app interfacing with the Bioconductor ExperimentHub. The landing page allows users to browse the ExperimentHub, select a data set, download and cache it, and import it directly into a Bioconductor iSEE app.
Author: Kevin Rue-Albrecht [aut, cre]
ORCID: 0000-0003-3899-3872
Maintainer: Kevin Rue-Albrecht <kevinrue67 at gmail.com>
citation("iSEEhub")):Installation
To install this package, start R (version "4.6") and enter:
if (!require("BiocManager", quietly = TRUE)) install.packages("BiocManager")# The following initializes usage of Bioc develBiocManager::install(version='devel')BiocManager::install("iSEEhub")For older versions of R, please refer to the appropriateBioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("iSEEhub")| Contributing to iSEEhub | HTML | R Script |
| Introduction to iSEEhub | HTML | R Script |
| Reference Manual | ||
| NEWS | Text |
Details
| biocViews | DataImport,ImmunoOncology Infrastructure,ShinyApps,SingleCell,Software |
| Version | 1.13.0 |
| In Bioconductor since | BioC 3.16 (R-4.2) (3 years) |
| License | Artistic-2.0 |
| Depends | SummarizedExperiment,SingleCellExperiment,ExperimentHub |
| Imports | AnnotationHub,BiocManager,DT,iSEE, methods,rintrojs,S4Vectors,shiny,shinydashboard,shinyjs, utils |
| System Requirements | |
| URL | https://github.com/iSEE/iSEEhub |
| Bug Reports | https://support.bioconductor.org/t/iSEEhub |
See More
| Suggests | BiocStyle,covr,knitr,RefManageR,rmarkdown,sessioninfo,testthat (>= 3.0.0),nullrangesData |
| Linking To | |
| Enhances | BioPlex,biscuiteerData,bodymapRat,CLLmethylation,CopyNeutralIMA,curatedAdipoArray,curatedAdipoChIP,curatedMetagenomicData,curatedTCGAData,DMRcatedata,DuoClustering2018,easierData,emtdata,epimutacionsData,FieldEffectCrc,GenomicDistributionsData,GSE103322,GSE13015,GSE62944,HDCytoData,HMP16SData,HumanAffyData,imcdatasets,mcsurvdata,MetaGxBreast,MetaGxOvarian,MetaGxPancreas,MethylSeqData,muscData,NxtIRFdata,ObMiTi,quantiseqr, restfulSEData, RLHub,sesameData,SimBenchData,SingleCellMultiModal,SingleMoleculeFootprintingData,spatialDmelxsim,STexampleData,TabulaMurisData,TabulaMurisSenisData,TENxVisiumData,tissueTreg,VectraPolarisData,xcoredata |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
FollowInstallation instructions to use this package in your R session.
| Source Package | iSEEhub_1.13.0.tar.gz |
| Windows Binary (x86_64) | |
| macOS Binary (x86_64) | iSEEhub_1.13.0.tgz |
| macOS Binary (arm64) | iSEEhub_1.13.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/iSEEhub |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/iSEEhub |
| Bioc Package Browser | https://code.bioconductor.org/browse/iSEEhub/ |
| Package Short Url | https://bioconductor.org/packages/iSEEhub/ |
| Package Downloads Report | Download Stats |