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TPP
This is thedevelopment version of TPP; for the stable release version, seeTPP.
Analyze thermal proteome profiling (TPP) experiments
DOI: 10.18129/B9.bioc.TPP
Bioconductor version: Development (3.23)
Analyze thermal proteome profiling (TPP) experiments with varying temperatures (TR) or compound concentrations (CCR).
Author: Dorothee Childs, Nils Kurzawa, Holger Franken, Carola Doce, Mikhail Savitski and Wolfgang Huber
Maintainer: Dorothee Childs <d.childs at posteo.de>
Citation (from within R, enter
citation("TPP")):Installation
To install this package, start R (version "4.6") and enter:
if (!require("BiocManager", quietly = TRUE)) install.packages("BiocManager")# The following initializes usage of Bioc develBiocManager::install(version='devel')BiocManager::install("TPP")For older versions of R, please refer to the appropriateBioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("TPP")| TPP_introduction_1D | R Script | |
| TPP_introduction_2D | R Script | |
| TPP_introduction_NPARC | R Script | |
| Reference Manual | ||
| NEWS | Text |
Details
| biocViews | ImmunoOncology,MassSpectrometry,Proteomics,Software |
| Version | 3.39.0 |
| In Bioconductor since | BioC 3.1 (R-3.2) (10.5 years) |
| License | Artistic-2.0 |
| Depends | R (>= 3.4),Biobase,dplyr,magrittr,tidyr |
| Imports | biobroom,broom,data.table,doParallel,foreach,futile.logger,ggplot2, grDevices,gridExtra, grid,knitr,limma,MASS,mefa,nls2,openxlsx (>= 2.4.0), parallel,plyr,purrr,RColorBrewer,RCurl,reshape2,rmarkdown, splines, stats,stringr,tibble, utils,VennDiagram,VGAM |
| System Requirements | |
| URL |
See More
| Suggests | BiocStyle,testthat |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | Rtpca |
| Links To Me | |
| Build Report | Build Report |
Package Archives
FollowInstallation instructions to use this package in your R session.
| Source Package | TPP_3.39.0.tar.gz |
| Windows Binary (x86_64) | TPP_3.39.0.zip (64-bit only) |
| macOS Binary (x86_64) | TPP_3.39.0.tgz |
| macOS Binary (arm64) | TPP_3.39.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/TPP |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/TPP |
| Bioc Package Browser | https://code.bioconductor.org/browse/TPP/ |
| Package Short Url | https://bioconductor.org/packages/TPP/ |
| Package Downloads Report | Download Stats |