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BREW3R.r
This is thedevelopment version of BREW3R.r; for the stable release version, seeBREW3R.r.
R package associated to BREW3R
Bioconductor version: Development (3.23)
This R package provide functions that are used in the BREW3R workflow. This mainly contains a function that extend a gtf as GRanges using information from another gtf (also as GRanges). The process allows to extend gene annotation without increasing the overlap between gene ids.
Author: Lucille Lopez-Delisle [aut, cre]
ORCID: 0000-0002-1964-4960
Maintainer: Lucille Lopez-Delisle <lucille.delisle at epfl.ch>
citation("BREW3R.r")):Installation
To install this package, start R (version "4.6") and enter:
if (!require("BiocManager", quietly = TRUE)) install.packages("BiocManager")# The following initializes usage of Bioc develBiocManager::install(version='devel')BiocManager::install("BREW3R.r")For older versions of R, please refer to the appropriateBioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("BREW3R.r")| BREW3R.r | HTML | R Script |
| Reference Manual | ||
| NEWS | Text |
Details
| biocViews | GenomeAnnotation,Software |
| Version | 1.7.0 |
| In Bioconductor since | BioC 3.19 (R-4.4) (1.5 years) |
| License | GPL-3 |
| Depends | |
| Imports | GenomicRanges, methods,rlang,S4Vectors, utils |
| System Requirements | |
| URL | https://github.com/lldelisle/BREW3R.r |
| Bug Reports | https://github.com/lldelisle/BREW3R.r/issues/ |
See More
| Suggests | testthat (>= 3.0.0),IRanges,knitr,rmarkdown,BiocStyle,rtracklayer |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
FollowInstallation instructions to use this package in your R session.
| Source Package | BREW3R.r_1.7.0.tar.gz |
| Windows Binary (x86_64) | BREW3R.r_1.7.0.zip (64-bit only) |
| macOS Binary (x86_64) | |
| macOS Binary (arm64) | BREW3R.r_1.7.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/BREW3R.r |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/BREW3R.r |
| Bioc Package Browser | https://code.bioconductor.org/browse/BREW3R.r/ |
| Package Short Url | https://bioconductor.org/packages/BREW3R.r/ |
| Package Downloads Report | Download Stats |