BSgenome.Hsapiens.UCSC.hg38

This is thereleased version of BSgenome.Hsapiens.UCSC.hg38; for the devel version, seeBSgenome.Hsapiens.UCSC.hg38.

Full genomic sequences for Homo sapiens (UCSC genome hg38)

DOI: 10.18129/B9.bioc.BSgenome.Hsapiens.UCSC.hg38

Bioconductor version: Release (3.22)

Full genomic sequences for Homo sapiens as provided by UCSC (genome hg38, based on assembly GRCh38.p14 since 2023/01/31). The sequences are stored in DNAString objects.

Author: The Bioconductor Dev Team

Maintainer: Bioconductor Package Maintainer <maintainer at bioconductor.org>

Citation (from within R, entercitation("BSgenome.Hsapiens.UCSC.hg38")):

Installation

To install this package, start R (version "4.5") and enter:

if (!require("BiocManager", quietly = TRUE))    install.packages("BiocManager")BiocManager::install("BSgenome.Hsapiens.UCSC.hg38")

For older versions of R, please refer to the appropriateBioconductor release.

Documentation


Reference Manual	PDF

Need some help? Ask on the Bioconductor Support site!

Details

biocViews	AnnotationData,BSgenome,Genetics,Homo_sapiens
Version	1.4.5
License	Artistic-2.0
Depends	R (>= 4.2.0),GenomeInfoDb(>= 1.34.9),BSgenome(>= 1.66.2)
Imports
System Requirements
URL

Suggests
Linking To
Enhances
Depends On Me	BSgenome.Hsapiens.UCSC.hg38.masked
Imports Me	cfDNAPro,epiregulon,katdetectr,methodical,musicatk,ORFhunteR,primirTSS,TENET, OHCA,revert,SATS
Suggests Me	BSgenome,bsseq,BUSpaRse,ChIPpeakAnno,circRNAprofiler,CleanUpRNAseq,CNEr,crisprBowtie,crisprBwa,crisprDesign,CRISPRseek,crisprShiny,crisprViz,DegCre,DMRcaller,eisaR,enhancerHomologSearch,EpiCompare,EpiTxDb,FRASER,GenomicRanges,GenomicScores,GRaNIE,GUIDEseq,HiCDCPlus,MethReg,MethylSeekR,MIRit,Motif2Site,motifbreakR,MotifPeeker,multicrispr,nullranges,periodicDNA,pqsfinder,RAIDS,REMP,scanMiRApp,SCOPE,Seqinfo,signeR,supersigs,TAPseq,transmogR,Ularcirc,BSgenome.Hsapiens.UCSC.hg38.dbSNP151.major,BSgenome.Hsapiens.UCSC.hg38.dbSNP151.minor,SNPlocs.Hsapiens.dbSNP144.GRCh38,SNPlocs.Hsapiens.dbSNP149.GRCh38,SNPlocs.Hsapiens.dbSNP150.GRCh38,SNPlocs.Hsapiens.dbSNP155.GRCh38,XtraSNPlocs.Hsapiens.dbSNP144.GRCh38,GencoDymo2,gwas2crispr,ICAMS
Links To Me

Package Archives

FollowInstallation instructions to use this package in your R session.

Source Package	BSgenome.Hsapiens.UCSC.hg38_1.4.5.tar.gz
Windows Binary (x86_64)
macOS Binary (x86_64)
macOS Binary (arm64)
Package Short Url	https://bioconductor.org/packages/BSgenome.Hsapiens.UCSC.hg38/
Package Downloads Report	Download Stats

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