TopAnat - Gene Expression Enrichment

GO-like enrichment of anatomical terms, mapped to genes by expression patterns. It is possible to run TopAnat using ourBgeeDB R package. This is the same as this web-service, but with more flexibility in the choice of parameters and developmental stages, and is based on thetopGO package.

Documentation

Examples

Example 1

Autism spectrum associated genes from Satterstrom et al. 2020 https://doi.org/10.1016/j.cell.2019.12.036

Example 2

Mouse genes mapped to the GO term "spermatogenesis".

Example 3

Zebrafish 3R ohnologs from Roux et al. 2017 https://doi.org/10.1093/molbev/msx199 showing nervous system expression of 3R duplicates.

Example 4

Pigmentation genes in rabbit.

Example 5

COVID-19 related human genes.

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TopAnat - Gene Expression Enrichment