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SARS-CoV-2 Eta variant

From Wikipedia, the free encyclopedia
Variant of the SARS-Cov-2 virus

Main article:Variants of SARS-CoV-2
Countries with confirmed cases of Eta variant as of 1 July 2021 (GISAID)
Legend:
  1,000+ confirmed sequences
  500–999 confirmed sequences
  100–499 confirmed sequences
  10–99 confirmed sequences
  2–9 confirmed sequences
  1 confirmed sequence
  None or no data available

TheEta variant is avariant ofSARS-CoV-2, thevirus that causesCOVID-19.The Eta variant or lineageB.1.525, also calledVUI-21FEB-03 (previouslyVUI-202102/03) by Public Health England (PHE) and formerly known asUK1188,21D or20A/S:484K, does not carry the same N501Y mutation found inAlpha,Beta andGamma, but carries the same E484K-mutation as found in the Gamma, Zeta, and Beta variants, and also carries the same ΔH69/ΔV70 deletion (a deletion of the amino acidshistidine andvaline in positions 69 and 70) as found in Alpha, N439K variant (B.1.141 and B.1.258) and Y453F variant (Cluster 5).[1]

Eta differs from all other variants by having both the E484K-mutation and a new F888L mutation (a substitution ofphenylalanine (F) withleucine (L) in the S2 domain of thespike protein). As of 5 March 2021, it had been detected in 23 countries.[2][3][4] It has also been reported inMayotte, theoverseas department/region ofFrance.[2] The first cases were detected in December 2020 in the UK and Nigeria, and as of 15 February, it had occurred in the highest frequency among samples in the latter country.[4] As of 24 February, 56 cases were found in the UK. Denmark, which sequences all its COVID-19 cases, found 113 cases of this variant from January 14 to February 21, of which seven were directly related to foreign travels to Nigeria.[3]

UK experts are studying it to understand how much of a risk it could be. It is currently regarded as a "variant under investigation", but pending further study, it may become a "variant of concern".Prof Ravi Gupta, from theUniversity of Cambridge spoke to theBBC and said lineage B.1.525 appeared to have "significant mutations" already seen in some of the other newer variants, which is partly reassuring as their likely effect is to some extent more predictable.[citation needed]

Under the simplified naming scheme proposed by theWorld Health Organization, lineage B.1.525 has been labelled variant Eta.[citation needed]

  • Amino acid mutations of SARS-CoV-2 Eta variant plotted on a genome map of SARS-CoV-2 with a focus on the spike.[5]
    Amino acid mutations of SARS-CoV-2 Eta variant plotted on a genome map of SARS-CoV-2 with a focus on the spike.[5]
Part ofa series on the
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Scientifically accurate atomic model of the external structure of SARS-CoV-2. Each "ball" is an atom.
Scientifically accurate atomic model of the external structure of SARS-CoV-2. Each "ball" is an atom.
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Statistics

[edit]
Cases by country
CountryConfirmed cases (GISAID)[6]
as of 27 August 2021
Last Reported Case
 Canada1,403
 USA1,18411 June 2021
 Germany73823 June 2021
 France6868 June 2021
 Denmark61324 May 2021
 United Kingdom51731 May 2021
 Italy39722 June 2021
 Nigeria25521 May 2021
 India22131 May 2021
 Spain17418 June 2021
 Norway819 May 2021
 Belgium7422 June 2021
 Ireland7129 May 2021
  Switzerland5513 June 2021
 Netherlands5431 May 2021
 Luxembourg5220 May 2021
 Slovenia528 April 2021
 Turkey4731 March 2021
 Ghana384 April 2021
 Uganda3712 May 2021
 South Sudan363 April 2021
 Finland259 April 2021
 Togo2525 February 2021
 Portugal2411 June 2021
 Bangladesh1815 June 2021
 Austria1730 April 2021
 Israel1718 May 2021
 Japan172 June 2021
 Australia1531 May 2021
 Kenya1330 April 2021
 Malta1321 June 2021
 South Africa1326 May 2021
 Cote d'Ivoire1025 February 2021
 Poland1014 March 2021
 Singapore1027 April 2021
 Sweden814 April 2021
 Angola716 April 2021
 Cameroon72 March 2021
 Niger61 April 2021
 Philippines624 March 2021
 Guinea5
 Indonesia55 May 2021
 Kuwait55 June 2021
 Rwanda528 January 2021
 Costa Rica428 March 2021
 Reunion425 May 2021
 Malaysia327 March 2021
 Mali34 April 2021
 Greece29 April 2021
 Guadeloupe211 March 2021
 Jordan27 January 2021
 Mayotte229 March 2021
 Qatar215 April 2021
 Russia211 May 2021
 South Korea226 February 2021
 Thailand21 March 2021
 Argentina14 May 2021
 Belarus122 March 2021
 Brazil115 February 2021
 Estonia129 March 2021
 Gabon130 March 2021
 Gambia1
 Latvia126 April 2021
 Morocco12 March 2021
 Senegal111 May 2021
 Sri Lanka128 April 2021
 Tunisia15 March 2021
 Armenia35 August 2021
 Bhutan1
 Gibraltar2
 Kyrgyzstan1617 June 2021
 World (71 countries)Total:7,129Total as of 27 August 2021

See also

[edit]

References

[edit]
  1. ^"Delta-PCR-testen" [The Delta PCR Test] (in Danish). Statens Serum Institut. February 25, 2021. RetrievedFebruary 27, 2021.
  2. ^ab"GISAID hCOV19 Variants (see menu option 'G/484K.V3 (B.1.525)')".GISAID. RetrievedMarch 4, 2021.
  3. ^ab"Status for udvikling af SARS-CoV-2 Variants of Concern (VOC) i Danmark" [Status of development of SARS-CoV-2 Variants of Concern (VOC) in Denmark] (in Danish). Statens Serum Institut. February 27, 2021. RetrievedFebruary 27, 2021.
  4. ^ab"B.1.525".cov-lineages.org.Pango team. RetrievedMarch 22, 2021.
  5. ^"Spike Variants: Eta variant, aka B.1.525".covdb.stanford.edu.Stanford University Coronavirus Antiviral & Resistance Database. July 1, 2021. RetrievedJuly 5, 2021.
  6. ^"GISAID - hCov19 Variants".www.gisaid.org. RetrievedJuly 2, 2021.
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