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Retinoid X receptor gamma

From Wikipedia, the free encyclopedia
Protein-coding gene in the species Homo sapiens
RXRG
Available structures
PDBOrtholog search:PDBeRCSB
List of PDB id codes

2GL8

Identifiers
AliasesRXRG, NR2B3, RXRC, Retinoid X receptor gamma, RXR-gamma, RXRgamma
External IDsOMIM:180247;MGI:98216;HomoloGene:21373;GeneCards:RXRG;OMA:RXRG - orthologs
Gene location (Human)
Chromosome 1 (human)
Chr.Chromosome 1 (human)[1]
Chromosome 1 (human)
Genomic location for RXRG
Genomic location for RXRG
Band1q23.3Start165,400,922bp[1]
End165,445,355bp[1]
Gene location (Mouse)
Chromosome 1 (mouse)
Chr.Chromosome 1 (mouse)[2]
Chromosome 1 (mouse)
Genomic location for RXRG
Genomic location for RXRG
Band1 H2.3|1 74.99 cMStart167,425,953bp[2]
End167,467,192bp[2]
RNA expression pattern
Bgee
HumanMouse (ortholog)
Top expressed in
  • muscle of thigh

  • anterior pituitary

  • gastrocnemius muscle

  • caudate nucleus

  • putamen

  • nucleus accumbens

  • testicle

  • C1 segment

  • islet of Langerhans

  • tibial nerve
Top expressed in
  • lumbar spinal ganglion

  • muscle of thigh

  • triceps brachii muscle

  • temporal muscle

  • quadriceps femoris muscle

  • vastus lateralis muscle

  • sternocleidomastoid muscle

  • myocardium of ventricle

  • striatum of neuraxis

  • superior frontal gyrus
More reference expression data
BioGPS
More reference expression data
Gene ontology
Molecular function
Cellular component
Biological process
Sources:Amigo /QuickGO
Orthologs
SpeciesHumanMouse
Entrez

6258

20183

Ensembl

ENSG00000143171

ENSMUSG00000015843

UniProt

P48443

P28705

RefSeq (mRNA)

NM_001256570
NM_001256571
NM_006917

NM_001159731
NM_009107

RefSeq (protein)

NP_001243499
NP_001243500
NP_008848

NP_001153203
NP_033133

Location (UCSC)Chr 1: 165.4 – 165.45 MbChr 1: 167.43 – 167.47 Mb
PubMed search[3][4]
Wikidata
View/Edit HumanView/Edit Mouse

Retinoid X receptor gamma (RXR-gamma), also known asNR2B3 (nuclear receptor subfamily 2, group B, member 3) is anuclear receptor that in humans is encoded by theRXRGgene.[5][6]

Function

[edit]

This gene encodes a member of theretinoid X receptor (RXR) family of nuclear receptors which are involved in mediating the antiproliferative effects ofretinoic acid (RA). This receptor forms heterodimers with theretinoic acid,thyroid hormone, andvitamin D receptors, increasing both DNA binding and transcriptional function on their respective response elements. This gene is expressed at significantly lower levels in non-small cell lung cancer cells.Alternate transcriptional splice variants, encoding differentisoforms, have been characterized.[6]

See also

[edit]

Interactions

[edit]

Retinoid X receptor gamma has been shown tointeract withITGB3BP.[7]

References

[edit]
  1. ^abcGRCh38: Ensembl release 89: ENSG00000143171Ensembl, May 2017
  2. ^abcGRCm38: Ensembl release 89: ENSMUSG00000015843Ensembl, May 2017
  3. ^"Human PubMed Reference:".National Center for Biotechnology Information, U.S. National Library of Medicine.
  4. ^"Mouse PubMed Reference:".National Center for Biotechnology Information, U.S. National Library of Medicine.
  5. ^Almasan A, Mangelsdorf DJ, Ong ES, Wahl GM, Evans RM (April 1994). "Chromosomal localization of the human retinoid X receptors".Genomics.20 (3):397–403.doi:10.1006/geno.1994.1193.PMID 8034312.
  6. ^ab"Entrez Gene: RXRG retinoid X receptor, gamma".
  7. ^Li D, Wang F, Samuels HH (Dec 2001)."Domain structure of the NRIF3 family of coregulators suggests potential dual roles in transcriptional regulation".Mol. Cell. Biol.21 (24):8371–84.doi:10.1128/MCB.21.24.8371-8384.2001.PMC 100002.PMID 11713274.

Further reading

[edit]

This article incorporates text from theUnited States National Library of Medicine, which is in thepublic domain.

PDB gallery
  • 1by4: STRUCTURE AND MECHANISM OF THE HOMODIMERIC ASSEMBLY OF THE RXR ON DNA
    1by4: STRUCTURE AND MECHANISM OF THE HOMODIMERIC ASSEMBLY OF THE RXR ON DNA
  • 1dsz: STRUCTURE OF THE RXR/RAR DNA-BINDING DOMAIN HETERODIMER IN COMPLEX WITH THE RETINOIC ACID RESPONSE ELEMENT DR1
    1dsz: STRUCTURE OF THE RXR/RAR DNA-BINDING DOMAIN HETERODIMER IN COMPLEX WITH THE RETINOIC ACID RESPONSE ELEMENT DR1
  • 1r0n: Crystal Structure of Heterodimeric Ecdsyone receptor DNA binding complex
    1r0n: Crystal Structure of Heterodimeric Ecdsyone receptor DNA binding complex
  • 1rxr: HIGH RESOLUTION SOLUTION STRUCTURE OF THE RETINOID X RECEPTOR DNA BINDING DOMAIN, NMR, 20 STRUCTURE
    1rxr: HIGH RESOLUTION SOLUTION STRUCTURE OF THE RETINOID X RECEPTOR DNA BINDING DOMAIN, NMR, 20 STRUCTURE
  • 2gl8: Human Retinoic acid receptor RXR-gamma ligand-binding domain
    2gl8: Human Retinoic acid receptor RXR-gamma ligand-binding domain
  • 2nll: RETINOID X RECEPTOR-THYROID HORMONE RECEPTOR DNA-BINDING DOMAIN HETERODIMER BOUND TO THYROID RESPONSE ELEMENT DNA
    2nll: RETINOID X RECEPTOR-THYROID HORMONE RECEPTOR DNA-BINDING DOMAIN HETERODIMER BOUND TO THYROID RESPONSE ELEMENT DNA
(1) Basic domains
(1.1) Basicleucine zipper (bZIP)
(1.2) Basic helix-loop-helix (bHLH)
Group A
Group B
Group C
bHLH-PAS
Group D
Group E
Group F
bHLH-COE
(1.3)bHLH-ZIP
(1.4) NF-1
(1.5) RF-X
(1.6) Basic helix-span-helix (bHSH)
(2)Zinc finger DNA-binding domains
(2.1)Nuclear receptor(Cys4)
subfamily 1
subfamily 2
subfamily 3
subfamily 4
subfamily 5
subfamily 6
subfamily 0
(2.2) Other Cys4
(2.3) Cys2His2
(2.4) Cys6
(2.5) Alternating composition
(2.6) WRKY
(3.1)Homeodomain
Antennapedia
ANTP class
protoHOX
Hox-like
metaHOX
NK-like
other
(3.2) Paired box
(3.3)Fork head /winged helix
(3.4)Heat shock factors
(3.5) Tryptophan clusters
(3.6) TEA domain
  • transcriptional enhancer factor
(4)β-Scaffold factors with minor groove contacts
(4.1)Rel homology region
(4.2)STAT
(4.3) p53-like
(4.4)MADS box
(4.6)TATA-binding proteins
(4.7)High-mobility group
(4.9) Grainyhead
(4.10) Cold-shock domain
(4.11) Runt
(0) Other transcription factors
(0.2) HMGI(Y)
(0.3)Pocket domain
(0.5)AP-2/EREBP-related factors
(0.6) Miscellaneous
RARTooltip Retinoic acid receptor
RXRTooltip Retinoid X receptor


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