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Partitiviridae

From Wikipedia, the free encyclopedia
Family of viruses

Partitiviridae
CryoEM ofPenicillium stoloniferum virus S capsid,EMD-5161[1]
TEM ofPenicillium stoloniferum virus S
Virus classificationEdit this classification
(unranked):Virus
Realm:Riboviria
Kingdom:Orthornavirae
Phylum:Pisuviricota
Class:Duplopiviricetes
Order:Durnavirales
Family:Partitiviridae

Partitiviridae is a family ofdouble-stranded RNA viruses.[2]Plants,fungi, andprotozoa serve as natural hosts. It has been suggested that they can also infectbacteria.[3] The name comes from the Latinpartitius, which means divided, and refers to the segmented genome of partitiviruses. The family contains five genera.[4][5]

Structure

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Penicillium stoloniferum virus F (PsV-F),Gammapartititvirus, and PsV-FCPdimer

Viruses in the familyPartitiviridae arenon-enveloped with icosahedral geometries and T=1 symmetry.[6] The diameter of partitiviruses is around 25–43 nm.[4]

Genome

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Genome of atkinsonella hypoxylon virus (AhV) of genusBetapartitivirus

Partitiviruses have double-strandedRNA genomes divided into two genomic segments, and there may be additional subgenomic segments. The twogenome segments are packaged in separate virus particles. They code for two separate proteins. The first segment codes for theRNA-dependent RNA polymerase (RdRp), and the second segment codes for thecoat protein. The segments are around 1.4–3.0 kbp in length, while the total genome length is around 3.0–4.8 kbp.[4][6]

Life cycle

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Viral replication is cytoplasmic. Entry into the host cell is achieved by penetration into the host cell. Replication follows the double-stranded RNA virus replication model. Double-stranded RNA virus transcription is the method of transcription. The virus exits the host cell by cell-to-cell movement. Fungi and plants serve as the natural host.[4][6] Cryspoviruses infectapicomplexian protozoa of the genusCryptosporidium,[7] while viruses of the other genera infect plants and fungi. It has been suggested that they can also infect bacteria.

GenusHost detailsTissue tropismEntry detailsRelease detailsReplication siteAssembly siteTransmission
CryspovirusProtistsNoneCell division; sporogenesis; hyphal anastomosisCell division; sporogenesis; hyphal anastomosisCytoplasmCytoplasmCell division; sporogenesis; hyphal anastomosis
AlphapartitivirusNoneCytoplasmCytoplasmCell division
DeltapartitivirusPlantsNoneViral movement; mechanical inoculationCell divisionCytoplasmCytoplasmCell division
BetapartitivirusNoneCytoplasmCytoplasmCell division
GammapartitivirusFungiNoneCytoplasmic exchange; hyphal anastomosisCytoplasmic exchange; hyphal anastomosisCytoplasmCytoplasmCytoplasmic exchange; hyphal anastomosis

Phylogenetics

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Based on the RNA polymerase gene this group can be divided into four clades (I-IV). Four isolates from animals and protozoans form a fifth clade. Clades I–IV consist of mixtures of partitivirus-like sequences from plants and fungi.[8]

Taxonomy

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Phylogenetic tree ofPartitiviridae

The family contains the following genera:[4][5]

References

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  1. ^Tang, J.; Pan, J.; Havens, W. M.; Ochoa, W. F.; Guu, T. S. Y.;Ghabrial, S. A.; Nibert, M. L.; Tao, Y. J.; Baker, T. S. (2010)."Backbone Trace of Partitivirus Capsid Protein from Electron Cryomicroscopy and Homology Modeling".Biophysical Journal.99 (2):685–694.Bibcode:2010BpJ....99..685T.doi:10.1016/j.bpj.2010.04.058.PMC 2905076.PMID 20643089.
  2. ^Vainio, EJ; Chiba, S; Ghabrial, SA; Maiss, E; Roossinck, M; Sabanadzovic, S; Suzuki, N; Xie, J; Nibert, M; Ictv Report, Consortium (January 2018)."ICTV Virus Taxonomy Profile: Partitiviridae".The Journal of General Virology.99 (1):17–18.doi:10.1099/jgv.0.000985.PMC 5882087.PMID 29214972.
  3. ^Neri U, Wolf YI, Roux S, Camargo AP, Kazlauskas D, Min Chen I, Lee B, Ivanova N, Allen LZ, Paez-Espino D, Bryant DA, Bhaya D, Krupovic M, Dolja VV, Kyrpides NC, Koonin EV, Gophna U (17 February 2022). "A five-fold expansion of the global RNA virome reveals multiple new clades of RNA bacteriophages".bioRxiv 10.1101/2022.02.15.480533.
  4. ^abcde"ICTV Online ReportPartitiviridae".
  5. ^ab"Virus Taxonomy: 2024 Release". International Committee on Taxonomy of Viruses. Retrieved16 March 2025.
  6. ^abc"Viral Zone". ExPASy. Retrieved15 June 2015.
  7. ^Nibert ML, Woods KM, Upton SJ, Ghabrial SA (2009) Cryspovirus: a new genus of protozoan viruses in the family Partitiviridae. Arch Virol 154(12):1959–1965
  8. ^Liu H, Fu Y, Xie J, Cheng J, Ghabrial SA, Li G, Yi X, Jiang D (2012) Discovery of Novel dsRNA Viral Sequences by In Silico Cloning and Implications for Viral Diversity, Host Range and Evolution. PLoS One. 2012;7(7):e42147.

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