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NKX3-2

From Wikipedia, the free encyclopedia
Protein-coding gene in the species Homo sapiens

NKX3-2
Identifiers
AliasesNKX3-2, NK3 homeobox 2, BAPX1, NKX3.2, NKX3B, SMMD
External IDsOMIM:602183;MGI:108015;HomoloGene:68168;GeneCards:NKX3-2;OMA:NKX3-2 - orthologs
Gene location (Human)
Chromosome 4 (human)
Chr.Chromosome 4 (human)[1]
Chromosome 4 (human)
Genomic location for NKX3-2
Genomic location for NKX3-2
Band4p15.33Start13,540,830bp[1]
End13,544,508bp[1]
Gene location (Mouse)
Chromosome 5 (mouse)
Chr.Chromosome 5 (mouse)[2]
Chromosome 5 (mouse)
Genomic location for NKX3-2
Genomic location for NKX3-2
Band5 B3|5 22.58 cMStart41,918,826bp[2]
End41,921,844bp[2]
RNA expression pattern
Bgee
HumanMouse (ortholog)
Top expressed in
  • tibia

  • muscle layer of sigmoid colon

  • cartilage tissue

  • tendon of biceps brachii

  • transverse colon

  • gonad

  • spleen

  • smooth muscle tissue

  • embryo

  • rectum
Top expressed in
  • sclerotome

  • female urethra

  • male urethra

  • embryo

  • somite

  • lateral plate mesoderm

  • embryo

  • primordial pancreas

  • Meckel's cartilage

  • vertebra
More reference expression data
BioGPS
n/a
Gene ontology
Molecular function
Cellular component
Biological process
Sources:Amigo /QuickGO
Orthologs
SpeciesHumanMouse
Entrez

579

12020

Ensembl

ENSG00000109705

ENSMUSG00000049691

UniProt

P78367

P97503

RefSeq (mRNA)

NM_001189

NM_007524

RefSeq (protein)

NP_001180

NP_031550

Location (UCSC)Chr 4: 13.54 – 13.54 MbChr 5: 41.92 – 41.92 Mb
PubMed search[3][4]
Wikidata
View/Edit HumanView/Edit Mouse

NK3 homeobox 2 also known asNKX3-2 is a humangene. It is a homolog ofbagpipe (bap) inDrosophila and therefore also known asBapx1 (bagpipe homeobox homolog1). Theprotein encoded by this gene is ahomeodomain containingtranscription factor.[5]

Function

[edit]

NKX3-2 plays a role in thedevelopment of the axial and limb skeleton.[6] Mutations disrupting the function of this gene are associated withspondylo-megaepiphyseal-metaphyseal dysplasia (SMMD).[7] Nkx3-2 in mice also regulatespatterning in the middle ear.[8] Two small bones in the middle ear, the malleus and incus, are homologous to the articular and quadrate, the bones of the proximal jaw joint in fish and other non-mammalian jawed vertebrates. NKX3-2 expression is required to pattern the articulated joint between these jaw bones, asknockdowns orknockouts of this gene result in the loss of the jaw joint in zebrafish,[9] chicken,[10] and amphibians.[11] Overexpression of this gene results in the development of ectopic mandibular cartilages in zebrafish[12] and amphibians.[13]

References

[edit]
  1. ^abcGRCh38: Ensembl release 89: ENSG00000109705Ensembl, May 2017
  2. ^abcGRCm38: Ensembl release 89: ENSMUSG00000049691Ensembl, May 2017
  3. ^"Human PubMed Reference:".National Center for Biotechnology Information, U.S. National Library of Medicine.
  4. ^"Mouse PubMed Reference:".National Center for Biotechnology Information, U.S. National Library of Medicine.
  5. ^Yoshiura KI, Murray JC (October 1997). "Sequence and chromosomal assignment of human BAPX1, a bagpipe-related gene, to 4p16.1: a candidate gene for skeletal dysplasia".Genomics.45 (2):425–428.doi:10.1006/geno.1997.4926.PMID 9344671.
  6. ^Lettice L, Hecksher-Sørensen J, Hill R (2001)."The role of Bapx1 (Nkx3.2) in the development and evolution of the axial skeleton".Journal of Anatomy.199 (Pt 1-2):181–187.doi:10.1111/j.1469-7580.2008.00944.x.PMC 1594973.PMID 11523821.
  7. ^Hellemans J, Simon M, Dheedene A, Alanay Y, Mihci E, Rifai L, et al. (December 2009)."Homozygous inactivating mutations in the NKX3-2 gene result in spondylo-megaepiphyseal-metaphyseal dysplasia".American Journal of Human Genetics.85 (6):916–922.doi:10.1016/j.ajhg.2009.11.005.PMC 2790567.PMID 20004766.
  8. ^Tucker AS, Watson RP, Lettice LA, Yamada G, Hill RE (March 2004). "Bapx1 regulates patterning in the middle ear: altered regulatory role in the transition from the proximal jaw during vertebrate evolution".Development.131 (6):1235–1245.doi:10.1242/dev.01017.PMID 14973294.S2CID 447070.
  9. ^Miller CT, Yelon D, Stainier DY, Kimmel CB (April 2003)."Two endothelin 1 effectors, hand2 and bapx1, pattern ventral pharyngeal cartilage and the jaw joint".Development.130 (7):1353–1365.doi:10.1242/dev.00339.PMID 12588851.
  10. ^Wilson J, Tucker AS (February 2004). "Fgf and Bmp signals repress the expression of Bapx1 in the mandibular mesenchyme and control the position of the developing jaw joint".Developmental Biology.266 (1):138–150.doi:10.1016/j.ydbio.2003.10.012.PMID 14729484.
  11. ^Lukas P, Olsson L (November 2018). "Bapx1 is required for jaw joint development in amphibians".Evolution & Development.20 (6):192–206.doi:10.1111/ede.12267.PMID 30168254.S2CID 52133937.
  12. ^Nichols JT, Pan L, Moens CB, Kimmel CB (July 2013)."barx1 represses joints and promotes cartilage in the craniofacial skeleton".Development.140 (13):2765–2775.doi:10.1242/dev.090639.PMC 3678344.PMID 23698351.
  13. ^Lukas P, Olsson L (2018)."Bapx1 upregulation is associated with ectopic mandibular cartilage development in amphibians".Zoological Letters.4 (1): 16.doi:10.1186/s40851-018-0101-3.PMC 5998585.PMID 29942645.

Further reading

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External links

[edit]
(1) Basic domains
(1.1) Basicleucine zipper (bZIP)
(1.2) Basic helix-loop-helix (bHLH)
Group A
Group B
Group C
bHLH-PAS
Group D
Group E
Group F
bHLH-COE
(1.3)bHLH-ZIP
(1.4) NF-1
(1.5) RF-X
(1.6) Basic helix-span-helix (bHSH)
(2)Zinc finger DNA-binding domains
(2.1)Nuclear receptor(Cys4)
subfamily 1
subfamily 2
subfamily 3
subfamily 4
subfamily 5
subfamily 6
subfamily 0
(2.2) Other Cys4
(2.3) Cys2His2
(2.4) Cys6
(2.5) Alternating composition
(2.6) WRKY
(3.1)Homeodomain
Antennapedia
ANTP class
protoHOX
Hox-like
metaHOX
NK-like
other
(3.2) Paired box
(3.3)Fork head /winged helix
(3.4)Heat shock factors
(3.5) Tryptophan clusters
(3.6) TEA domain
  • transcriptional enhancer factor
(4)β-Scaffold factors with minor groove contacts
(4.1)Rel homology region
(4.2)STAT
(4.3) p53-like
(4.4)MADS box
(4.6)TATA-binding proteins
(4.7)High-mobility group
(4.9) Grainyhead
(4.10) Cold-shock domain
(4.11) Runt
(0) Other transcription factors
(0.2) HMGI(Y)
(0.3)Pocket domain
(0.5)AP-2/EREBP-related factors
(0.6) Miscellaneous
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