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NFATC1

From Wikipedia, the free encyclopedia
Protein-coding gene in the species Homo sapiens
NFATC1
Available structures
PDBOrtholog search:PDBeRCSB
List of PDB id codes

1A66,1NFA

Identifiers
AliasesNFATC1, NF-ATC, NFAT2, NFATc, NF-ATc1.2, nuclear factor of activated T-cells 1, nuclear factor of activated T cells 1
External IDsOMIM:600489;MGI:102469;HomoloGene:32336;GeneCards:NFATC1;OMA:NFATC1 - orthologs
Gene location (Human)
Chromosome 18 (human)
Chr.Chromosome 18 (human)[1]
Chromosome 18 (human)
Genomic location for NFATC1
Genomic location for NFATC1
Band18q23Start79,395,856bp[1]
End79,529,325bp[1]
Gene location (Mouse)
Chromosome 18 (mouse)
Chr.Chromosome 18 (mouse)[2]
Chromosome 18 (mouse)
Genomic location for NFATC1
Genomic location for NFATC1
Band18 E3|18 53.66 cMStart80,649,420bp[2]
End80,756,286bp[2]
RNA expression pattern
Bgee
HumanMouse (ortholog)
Top expressed in
  • oocyte

  • muscle of thigh

  • secondary oocyte

  • Skeletal muscle tissue of rectus abdominis

  • triceps brachii muscle

  • gastrocnemius muscle

  • Skeletal muscle tissue of biceps brachii

  • sural nerve

  • glutes

  • vastus lateralis muscle
Top expressed in
  • granulocyte

  • mesenteric lymph nodes

  • endocardial cushion

  • triceps brachii muscle

  • muscle of thigh

  • olfactory epithelium

  • knee joint

  • temporal muscle

  • blood

  • ankle
More reference expression data
BioGPS
More reference expression data
Gene ontology
Molecular function
Cellular component
Biological process
Sources:Amigo /QuickGO
Orthologs
SpeciesHumanMouse
Entrez

4772

18018

Ensembl

ENSG00000131196

ENSMUSG00000033016

UniProt

O95644

O88942

RefSeq (mRNA)
NM_172390
NM_001278669
NM_001278670
NM_001278672
NM_001278673

NM_001278675
NM_006162
NM_172387
NM_172388
NM_172389

NM_001164109
NM_001164110
NM_001164111
NM_001164112
NM_016791

NM_198429

RefSeq (protein)
NP_001265598
NP_001265599
NP_001265601
NP_001265602
NP_001265604

NP_006153
NP_765975
NP_765976
NP_765977
NP_765978

n/a

Location (UCSC)Chr 18: 79.4 – 79.53 MbChr 18: 80.65 – 80.76 Mb
PubMed search[3][4]
Wikidata
View/Edit HumanView/Edit Mouse

Nuclear factor of activated T-cells, cytoplasmic 1 is aprotein that in humans is encoded by theNFATC1gene.[5]

Function

[edit]

The product of this gene is a component of the nuclear factor of activated T cells DNA-binding transcription complex. This complex consists of at least two components: a preexisting cytosolic component that translocates to the nucleus uponT cell receptor (TCR) stimulation, and an inducible nuclear component. Proteins belonging to this family of transcription factors play a central role in inducible gene transcription during immune response. The product of this gene is an inducible nuclear component. It functions as a major molecular target for theimmunosuppressive drugs such asciclosporin. Five transcript variants encoding distinct isoforms have been identified for this gene. Different isoforms of this protein may regulate inducible expression of different cytokine genes.[6]

Interactions

[edit]

NFATC1 has been shown tointeract withPIM1.[7]

See also

[edit]

References

[edit]
  1. ^abcGRCh38: Ensembl release 89: ENSG00000131196Ensembl, May 2017
  2. ^abcGRCm38: Ensembl release 89: ENSMUSG00000033016Ensembl, May 2017
  3. ^"Human PubMed Reference:".National Center for Biotechnology Information, U.S. National Library of Medicine.
  4. ^"Mouse PubMed Reference:".National Center for Biotechnology Information, U.S. National Library of Medicine.
  5. ^Northrop JP, Ho SN, Chen L, Thomas DJ, Timmerman LA, Nolan GP, Admon A, Crabtree GR (Jun 1994). "NF-AT components define a family of transcription factors targeted in T-cell activation".Nature.369 (6480):497–502.Bibcode:1994Natur.369..497N.doi:10.1038/369497a0.PMID 8202141.S2CID 9920546.
  6. ^"Entrez Gene: NFATC1 nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 1".
  7. ^Rainio EM, Sandholm J, Koskinen PJ (Feb 2002)."Cutting edge: Transcriptional activity of NFATc1 is enhanced by the Pim-1 kinase".Journal of Immunology.168 (4):1524–7.doi:10.4049/jimmunol.168.4.1524.PMID 11823475.

Further reading

[edit]

External links

[edit]
PDB gallery
  • 1a66: SOLUTION NMR STRUCTURE OF THE CORE NFATC1/DNA COMPLEX, 18 STRUCTURES
    1a66: SOLUTION NMR STRUCTURE OF THE CORE NFATC1/DNA COMPLEX, 18 STRUCTURES
  • 1nfa: HUMAN TRANSCRIPTION FACTOR NFATC DNA BINDING DOMAIN, NMR, 10 STRUCTURES
    1nfa: HUMAN TRANSCRIPTION FACTOR NFATC DNA BINDING DOMAIN, NMR, 10 STRUCTURES
(1) Basic domains
(1.1) Basicleucine zipper (bZIP)
(1.2) Basic helix-loop-helix (bHLH)
Group A
Group B
Group C
bHLH-PAS
Group D
Group E
Group F
bHLH-COE
(1.3)bHLH-ZIP
(1.4) NF-1
(1.5) RF-X
(1.6) Basic helix-span-helix (bHSH)
(2)Zinc finger DNA-binding domains
(2.1)Nuclear receptor(Cys4)
subfamily 1
subfamily 2
subfamily 3
subfamily 4
subfamily 5
subfamily 6
subfamily 0
(2.2) Other Cys4
(2.3) Cys2His2
(2.4) Cys6
(2.5) Alternating composition
(2.6) WRKY
(3.1)Homeodomain
Antennapedia
ANTP class
protoHOX
Hox-like
metaHOX
NK-like
other
(3.2) Paired box
(3.3)Fork head /winged helix
(3.4)Heat shock factors
(3.5) Tryptophan clusters
(3.6) TEA domain
  • transcriptional enhancer factor
(4)β-Scaffold factors with minor groove contacts
(4.1)Rel homology region
(4.2)STAT
(4.3) p53-like
(4.4)MADS box
(4.6)TATA-binding proteins
(4.7)High-mobility group
(4.9) Grainyhead
(4.10) Cold-shock domain
(4.11) Runt
(0) Other transcription factors
(0.2) HMGI(Y)
(0.3)Pocket domain
(0.5)AP-2/EREBP-related factors
(0.6) Miscellaneous

This article incorporates text from theUnited States National Library of Medicine, which is in thepublic domain.


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