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Gram-negative bacteria

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Group of bacteria that do not retain the Gram stain used in bacterial differentiation
Microscopic image of gram-negativePseudomonas aeruginosa bacteria (pink-red rods)

Gram-negative bacteria arebacteria that, unlikegram-positive bacteria, do not retain thecrystal violet stain used in theGram staining method of bacterial differentiation.[1] Their defining characteristic is that theircell envelope consists of a thinpeptidoglycancell wall sandwiched between an inner (cytoplasmic)membrane and anouter membrane.[2] These bacteria are found in all environments that support life onEarth.

Within this category, notable species include themodel organismEscherichia coli, along with variouspathogenic bacteria, such asPseudomonas aeruginosa,Chlamydia trachomatis, andYersinia pestis. They pose significant challenges in the medical field due to their outer membrane, which acts as a protective barrier against numerousantibiotics (includingpenicillin),detergents that would normally damage the inner cell membrane, and theantimicrobial enzymelysozyme produced by animals as part of theirinnate immune system. Furthermore, the outerleaflet of this membrane contains a complexlipopolysaccharide (LPS) whoselipid A component can trigger a toxic reaction when the bacteria arelysed by immune cells. This reaction may lead toseptic shock, resulting inlow blood pressure,respiratory failure,reduced oxygen delivery, andlactic acidosis.[3]

Severalclasses of antibiotics have been developed to target gram-negative bacteria, includingaminopenicillins,ureidopenicillins,cephalosporins,beta-lactam-betalactamase inhibitor combinations (such aspiperacillin-tazobactam),folate antagonists,quinolones, andcarbapenems. Many of these antibiotics also cover gram-positive bacteria. The antibiotics that specifically target gram-negative organisms includeaminoglycosides,monobactams (such asaztreonam), andciprofloxacin.

Characteristics

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Gram-negative (LPS-diderm)cell wall structure
Gram-positive and -negativebacteria are differentiated chiefly by theircell wall structure

Conventional gram-negative (LPS-diderm) bacteria displaythe following characteristics:[citation needed]

However, the LPS-diderm group (corresponding to kingdomPseudomonadati, formerly 'Hydrobacteria') is not the only type of bacteria that stain negative.[4]Mycobacterium (or rather most ofMycobacteriales), which does not belong in the group, have independently evolved an outer cell membrane, with a cell wall made ofmycolic acid.[5] This gives it very different structure and features.[6][7][8][9]

Classification

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Along with cell shape,Gram staining is a rapid diagnostic tool and once was used to group species at the subdivision of Bacteria.Historically, the kingdomMonera was divided into fourdivisions based on Gram staining:Firmicutes (+),Gracillicutes (−),Mollicutes (0) andMendocutes (var.).[10]Since 1987, themonophyly of the gram-negative bacteria has beendisproven withmolecular studies.[11] However some authors, such asCavalier-Smith still treat them as amonophyletictaxon (though not aclade; his definition ofmonophyly requires a single common ancestor but does not requireholophyly, the property that all descendants be encompassed by thetaxon) and refer to the group as asubkingdom "Negibacteria".[12]

Current knowledge divides the gram-negatives into two large groups and some straddlers. The more "conventional" Gram-negatives with an LPS outer membrane do share a common ancestor and are grouped in kingdomPseudomonadati.[4] The less conventional ones are, as mentioned above, the orderMycobacteriales, have amycolic acid cell wall and an outer membrane.[5] The kingdom and the order are each monophyletic (or rather, not holyphyletic), but the "LPS-diderm" and "mycolic-diderm" groups are not, because some bacteria in the kingdom and the order do not, in fact, stain gram negative. They will be discussed in the next section.

Taxonomy

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Main article:Bacterial taxonomy
Further information:Bacteria § Classification and identification
This sectionmay be too technical for most readers to understand. Pleasehelp improve it tomake it understandable to non-experts, without removing the technical details.(March 2014) (Learn how and when to remove this message)
It has been suggested that this section besplit out into another article titledGram stain. (Discuss)(November 2023)

Bacteria are traditionally classified based on theirGram-staining response into thegram-positive and gram-negative bacteria. Having just one membrane, the gram-positive bacteria are also known asmonoderm bacteria, while gram-negative bacteria, having two membranes, are also known asdiderm bacteria. It was traditionally thought that the groups represent lineages, i.e., the extra membrane only evolved once, such that gram-negative bacteria are more closely related to one another than to any gram-positive bacteria. While this is often true, the classification system breaks down in some cases, with lineage groupings not matching the staining result.[13][14][6][7] Thus, Gram staining cannot be reliably used to assess familial relationships of bacteria. Nevertheless, staining often gives reliable information about the composition of the cell membrane, distinguishing between the presence or absence of anouter lipid membrane.[13][15]

Of these two structurally distinct groups ofprokaryotic organisms, monoderm prokaryotes are thought to be ancestral. Based upon a number of different observations, including that the gram-positive bacteria are the most sensitive toantibiotics and that the gram-negative bacteria are, in general,resistant to antibiotics, it has been proposed that the outer cell membrane in gram-negative bacteria (diderms) evolved as a protective mechanism against antibioticselection pressure.[13][14][15][8] Some bacteria such asDeinococcus, which stain gram-positive due to the presence of a thickpeptidoglycan layer, but also possess an outer cell membrane are suggested as intermediates in the transition between monoderm (gram-positive) and diderm (gram-negative) bacteria.[13][8]

The conventional LPS-diderm group of gram-negative bacteria (e.g.,Pseudomonadota,Aquificota,Chlamydiota,Bacteroidota,Chlorobiota, "Cyanobacteria",Fibrobacterota,Verrucomicrobiota,Planctomycetota,Spirochaetota,Acidobacteriota) are uniquely identified by a fewconserved signature indel (CSI) in theHSP60 (GroEL) protein. The presence of this CSI in all sequenced species of conventional lipopolysaccharide-containing gram-negative bacterial phyla provides evidence that these phyla of bacteria form amonophyleticclade and that no loss of the outer membrane from any species from this group has occurred.[8] They have accordingly been assigned a kingdomPseudomonadati (formerly "Hydrobacteria").[4]

The difficulty lies in the other taxa that also have a diderm structure.

  • The first group is monophyletic but not holophyletic. It includes a number of taxa (includingNegativicutes,Fusobacteriota,Synergistota, andElusimicrobiota) that are either part of thephylumBacillota (a monoderm group) or branches in its proximity.[7][8][9] They lack theGroEL CSI signature, which is proof that they do not belong in the former group.[8] Some members are likely monoderm, just with a very thin layer of LPS to not appear on the stain. Others have more convoluted structures.[16]
  • The second group are the clinically-relevantMycobacterium, expanding to most of its encompassing order ofMycobacteriales. They do not have the CSI, and their cell wall is made of a different substance:mycolic acid.[5]

Example species

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Theproteobacteria are a major superphylum of gram-negative bacteria, includingE. coli,Salmonella,Shigella, and otherEnterobacteriaceae,Pseudomonas,Moraxella,Helicobacter,Stenotrophomonas,Bdellovibrio,acetic acid bacteria,Legionella etc. Other notable groups of gram-negative bacteria include thecyanobacteria,spirochaetes, andgreen sulfur bacteria.[17][18][19]

Medically-relevant gram-negativediplococci include the four types that cause asexually transmitted disease (Neisseria gonorrhoeae[20]), ameningitis (Neisseria meningitidis[21]), and respiratory symptoms (Moraxella catarrhalis,[22] AcoccobacillusHaemophilus influenzae is another medically relevant coccal type.[23]

Medically relevant gram-negativebacilli include a multitude of species. Some of them cause primarily respiratory problems (Klebsiella pneumoniae,Legionella pneumophila,Pseudomonas aeruginosa), primarily urinary problems (Escherichia coli,Proteus mirabilis,Enterobacter cloacae,Serratia marcescens), and primarily gastrointestinal problems (Helicobacter pylori,Salmonella enteritidis,Salmonella typhi).[citation needed]

Gram-negative bacteria associated withhospital-acquired infections includeAcinetobacter baumannii, which causebacteremia, secondarymeningitis, andventilator-associated pneumonia in hospitalintensive-care units.

Bacterial transformation

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Transformation is one of three processes forhorizontal gene transfer, in which exogenous genetic material passes from onebacterium to another, the other two beingconjugation (transfer ofgenetic material between two bacterial cells in direct contact) andtransduction (injection of foreign DNA by abacteriophage virus into the host bacterium).[24][25] In transformation, thegenetic material passes through the intervening medium, and uptake is completely dependent on the recipient bacterium.[24]

As of 2014 about 80 species of bacteria were known to be capable of transformation, about evenly divided betweengram-positive and gram-negative bacteria; the number might be an overestimate since several of the reports are supported by single papers.[24] Transformation has been studied in medically important gram-negative bacteria species such asHelicobacter pylori,Legionella pneumophila,Neisseria meningitidis,Neisseria gonorrhoeae,Haemophilus influenzae andVibrio cholerae.[26] It has also been studied in gram-negative species found in soil such asPseudomonas stutzeri,Acinetobacter baylyi, and gram-negative plant pathogens such asRalstonia solanacearum andXylella fastidiosa.[26]

Role in disease

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Example of a workup algorithm of possible bacterial infection in cases with no specifically requested targets (non-bacteria, mycobacteria etc.), with most common situations and agents seen in a New England setting. Clinically significant Gram-negative bacteria are usually rods, as shown near bottom right. Although some gram-negative bacteria can be recognized by "bench tests", diagnosis in the modern microbiology lab usually involvesMALDI-TOF and/or multitarget assay.

One of the several unique characteristics of gram-negative bacteria is the structure of thebacterial outer membrane. The outer leaflet of this membrane containslipopolysaccharide (LPS), whoselipid A portion acts as anendotoxin.[1] If gram-negative bacteria enter thecirculatory system, LPS can trigger aninnate immune response, activating theimmune system and producingcytokines (hormonal regulators). This leads toinflammation and can cause a toxic reaction, resulting in fever, an increased respiratory rate, andlow blood pressure. That is why some infections with gram-negative bacteria can lead to life-threateningseptic shock.[3]

The outer membrane protects the bacteria from severalantibiotics,dyes, anddetergents that would normally damage either the inner membrane or the cell wall (made ofpeptidoglycan). The outer membrane provides these bacteria with resistance tolysozyme andpenicillin. Theperiplasmic space (space between the two cell membranes) also containsenzymes which break down or modify antibiotics. Drugs commonly used to treat gram negative infections include amino, carboxy and ureido penicillins (ampicillin,amoxicillin,pipercillin,ticarcillin). These drugs may be combined withbeta-lactamase inhibitors to combat the presence of enzymes that can digest these drugs (known asbeta-lactamases) in the peri-plasmic space. Other classes of drugs that have gram negative spectrum includecephalosporins,monobactams (aztreonam), aminoglycosides,quinolones,macrolides,chloramphenicol,folate antagonists, andcarbapenems.[27]

Orthographic note

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The adjectivesgram-positive andgram-negative derive from the surname ofHans Christian Gram, a Danish bacteriologist; aseponymous adjectives, their initial letter can be either capitalG or lower-caseg, depending on whichstyle guide (e.g., that of theCDC), if any, governs the document being written.[28] This is further explained atGram staining § Orthographic note.

See also

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References

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Notes

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  1. ^abBaron S, Salton MR, Kim KS (1996)."Structure". In Baron S (ed.).Medical Microbiology (4th ed.). University of Texas Medical Branch at Galveston.ISBN 978-0-9631172-1-2.PMID 21413343.Archived from the original on 2021-07-06. Retrieved2021-08-18.
  2. ^Silhavy, T. J.; Kahne, D.; Walker, S. (2010-05-01)."The Bacterial Cell Envelope".Cold Spring Harbor Perspectives in Biology.2 (5): a000414.doi:10.1101/cshperspect.a000414.ISSN 1943-0264.PMC 2857177.PMID 20452953.
  3. ^abPelletier, Lawrence L. (1996)."Microbiology of the Circulatory System". In Baron S (ed.).Medical Microbiology (4th ed.). University of Texas Medical Branch at Galveston.ISBN 978-0-9631172-1-2.PMID 21413321.Archived from the original on 2022-04-13. Retrieved2021-05-12.
  4. ^abcGöker, Markus; Oren, Aharon (22 January 2024). "Valid publication of names of two domains and seven kingdoms of prokaryotes".International Journal of Systematic and Evolutionary Microbiology.74 (1).doi:10.1099/ijsem.0.006242.PMID 38252124.
  5. ^abcGupta, Radhey S. (22 February 2019)."Commentary: Genome-Based Taxonomic Classification of the Phylum Actinobacteria".Frontiers in Microbiology.10: 206.doi:10.3389/fmicb.2019.00206.PMC 6395429.PMID 30853945.Mycolic acids are important constituents of the cell envelopes of most members.
  6. ^abDesvaux M, Hébraud M, Talon R, Henderson IR (April 2009). "Secretion and subcellular localizations of bacterial proteins: a semantic awareness issue".Trends Microbiol.17 (4):139–45.doi:10.1016/j.tim.2009.01.004.PMID 19299134.
  7. ^abcSutcliffe IC (October 2010). "A phylum level perspective on bacterial cell envelope architecture".Trends Microbiol.18 (10):464–70.doi:10.1016/j.tim.2010.06.005.PMID 20637628.
  8. ^abcdefGupta RS (August 2011)."Origin of diderm (gram-negative) bacteria: antibiotic selection pressure rather than endosymbiosis likely led to the evolution of bacterial cells with two membranes".Antonie van Leeuwenhoek.100 (2):171–82.doi:10.1007/s10482-011-9616-8.PMC 3133647.PMID 21717204.
  9. ^abMarchandin H, Teyssier C, Campos J, Jean-Pierre H, Roger F, Gay B, Carlier JP, Jumas-Bilak E (June 2010)."Negativicoccus succinicivorans gen. nov., sp. nov., isolated from human clinical samples, emended description of the family Veillonellaceae and description of Negativicutes classis nov., Selenomonadales ord. nov. and Acidaminococcaceae fam. nov. in the bacterial phylum Firmicutes".Int. J. Syst. Evol. Microbiol.60 (Pt 6):1271–9.doi:10.1099/ijs.0.013102-0.PMID 19667386.
  10. ^Gibbons, N. E.; Murray, R. G. E. (1978)."Proposals Concerning the Higher Taxa of Bacteria".International Journal of Systematic Bacteriology.28 (1):1–6.doi:10.1099/00207713-28-1-1.
  11. ^Woese CR (June 1987)."Bacterial evolution".Microbiol. Rev.51 (2):221–71.doi:10.1128/MMBR.51.2.221-271.1987.PMC 373105.PMID 2439888.
  12. ^Cavalier-Smith, T. (2006)."Rooting the tree of life by transition analyses".Biol. Direct.1: 19.doi:10.1186/1745-6150-1-19.PMC 1586193.PMID 16834776.
  13. ^abcdGupta, RS (December 1998)."Protein phylogenies and signature sequences: A reappraisal of evolutionary relationships among archaebacteria, eubacteria, and eukaryotes".Microbiol. Mol. Biol. Rev.62 (4):1435–91.doi:10.1128/MMBR.62.4.1435-1491.1998.PMC 98952.PMID 9841678.
  14. ^abGupta RS (2000)."The natural evolutionary relationships among prokaryotes"(PDF).Crit. Rev. Microbiol.26 (2):111–31.CiteSeerX 10.1.1.496.1356.doi:10.1080/10408410091154219.PMID 10890353.S2CID 30541897.Archived(PDF) from the original on 2018-07-20. Retrieved2017-10-24.
  15. ^abGupta RS (August 1998)."What are archaebacteria: life's third domain or monoderm prokaryotes related to gram-positive bacteria? A new proposal for the classification of prokaryotic organisms".Mol. Microbiol.29 (3):695–707.doi:10.1046/j.1365-2958.1998.00978.x.PMID 9723910.
  16. ^Choi, JK; Poudel, S; Yee, N; Goff, JL (3 October 2024)."Deeply branching Bacillota species exhibit atypical Gram-negative staining".Microbiology Spectrum.12 (10): e0073224.doi:10.1128/spectrum.00732-24.PMC 11448272.PMID 39162559.
  17. ^Castenholz, Richard W. (2015),"General Characteristics of the Cyanobacteria",Bergey's Manual of Systematics of Archaea and Bacteria, John Wiley & Sons, Ltd, pp. 1–23,doi:10.1002/9781118960608.cbm00019,ISBN 978-1-118-96060-8, retrieved2025-01-25
  18. ^Cole, John R. (1990-01-01), Carter, G. R.; Cole, John R. (eds.),"5 - Spirochetes",Diagnostic Procedure in Veterinary Bacteriology and Mycology (Fifth Edition), San Diego: Academic Press, pp. 41–60,doi:10.1016/b978-0-12-161775-2.50009-8,ISBN 978-0-12-161775-2, retrieved2025-01-25
  19. ^Schmidt, Thomas M. (2019).Encyclopedia of Microbiology (4th ed.). San Diego: Elsevier Science & Technology. pp. 527–537.ISBN 978-0-12-811737-8.
  20. ^Yeshanew, Addisu Gize; Geremew, Rozina Ambachew (2018-07-17)."MNeisseria Gonorrhoae and their antimicrobial susceptibility patterns among symptomatic patients from Gondar town, north West Ethiopia".Antimicrobial Resistance and Infection Control.7 (85): 85.doi:10.1186/s13756-018-0376-3.PMC 6050735.PMID 30026943.
  21. ^"Vaccine Preventable Diseases Surveillance Manual".CDC. April 3, 2018. RetrievedJanuary 26, 2024.
  22. ^Verduin, Cees M.; Hol, Cees; Fleer, Andre; van Dijk, Hans; van Belkum, Alex (January 2002)."Moraxella catarrhalis: from Emerging to Established Pathogen".Clinical Microbiology Reviews.15 (1):125–144.doi:10.1128/CMR.15.1.125-144.2002.PMC 118065.PMID 11781271.
  23. ^"For Clinicians: Haemophilus influenzae".CDC. February 13, 2018. RetrievedJanuary 26, 2024.
  24. ^abcJohnston C, Martin B, Fichant G, Polard P, Claverys JP (2014). "Bacterial transformation: distribution, shared mechanisms and divergent control".Nat. Rev. Microbiol.12 (3):181–96.doi:10.1038/nrmicro3199.PMID 24509783.S2CID 23559881.
  25. ^Korotetskiy I, Shilov S, Kuznetsova T, Kerimzhanova B, Korotetskaya N, Ivanova L, Zubenko N, Parenova R, Reva O (2023)."Analysis of Whole-Genome Sequences of Pathogenic Gram-Positive and Gram-Negative Isolates from the Same Hospital Environment to Investigate Common Evolutionary Trends Associated with Horizontal Gene Exchange, Mutations and DNA Methylation Patterning".Microorganisms.11 (2): 323.doi:10.3390/microorganisms11020323.PMC 9961978.PMID 36838287.
  26. ^abSeitz P, Blokesch M (2013)."Cues and regulatory pathways involved in natural competence and transformation in pathogenic and environmental Gram-negative bacteria".FEMS Microbiol. Rev.37 (3):336–63.doi:10.1111/j.1574-6976.2012.00353.x.PMID 22928673.
  27. ^Glück, Thomas (12 December 2003)."Gram-Negative Bacteria and Broad-Spectrum Antibiotics: Good News Except for Fluoroquinolones".www.jwatch.org. NEJM Journal Watch.Archived from the original on 10 March 2018. Retrieved10 March 2018.
  28. ^"Preferred Usage - Emerging Infectious Disease journal - CDC".CDC.gov. Centers for Disease Control and Prevention.Archived from the original on 2018-01-29. Retrieved2018-03-04.

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