However, the LPS-diderm group (corresponding to kingdomPseudomonadati, formerly 'Hydrobacteria') is not the only type of bacteria that stain negative.[4]Mycobacterium (or rather most ofMycobacteriales), which does not belong in the group, have independently evolved an outer cell membrane, with a cell wall made ofmycolic acid.[5] This gives it very different structure and features.[6][7][8][9]
Current knowledge divides the gram-negatives into two large groups and some straddlers. The more "conventional" Gram-negatives with an LPS outer membrane do share a common ancestor and are grouped in kingdomPseudomonadati.[4] The less conventional ones are, as mentioned above, the orderMycobacteriales, have amycolic acid cell wall and an outer membrane.[5] The kingdom and the order are each monophyletic (or rather, not holyphyletic), but the "LPS-diderm" and "mycolic-diderm" groups are not, because some bacteria in the kingdom and the order do not, in fact, stain gram negative. They will be discussed in the next section.
It has been suggested that this section besplit out into another article titledGram stain. (Discuss)(November 2023)
Bacteria are traditionally classified based on theirGram-staining response into thegram-positive and gram-negative bacteria. Having just one membrane, the gram-positive bacteria are also known asmonoderm bacteria, while gram-negative bacteria, having two membranes, are also known asdiderm bacteria. It was traditionally thought that the groups represent lineages, i.e., the extra membrane only evolved once, such that gram-negative bacteria are more closely related to one another than to any gram-positive bacteria. While this is often true, the classification system breaks down in some cases, with lineage groupings not matching the staining result.[13][14][6][7] Thus, Gram staining cannot be reliably used to assess familial relationships of bacteria. Nevertheless, staining often gives reliable information about the composition of the cell membrane, distinguishing between the presence or absence of anouter lipid membrane.[13][15]
Of these two structurally distinct groups ofprokaryotic organisms, monoderm prokaryotes are thought to be ancestral. Based upon a number of different observations, including that the gram-positive bacteria are the most sensitive toantibiotics and that the gram-negative bacteria are, in general,resistant to antibiotics, it has been proposed that the outer cell membrane in gram-negative bacteria (diderms) evolved as a protective mechanism against antibioticselection pressure.[13][14][15][8] Some bacteria such asDeinococcus, which stain gram-positive due to the presence of a thickpeptidoglycan layer, but also possess an outer cell membrane are suggested as intermediates in the transition between monoderm (gram-positive) and diderm (gram-negative) bacteria.[13][8]
The difficulty lies in the other taxa that also have a diderm structure.
The first group is monophyletic but not holophyletic. It includes a number of taxa (includingNegativicutes,Fusobacteriota,Synergistota, andElusimicrobiota) that are either part of thephylumBacillota (a monoderm group) or branches in its proximity.[7][8][9] They lack theGroEL CSI signature, which is proof that they do not belong in the former group.[8] Some members are likely monoderm, just with a very thin layer of LPS to not appear on the stain. Others have more convoluted structures.[16]
The second group are the clinically-relevantMycobacterium, expanding to most of its encompassing order ofMycobacteriales. They do not have the CSI, and their cell wall is made of a different substance:mycolic acid.[5]
Example of a workup algorithm of possible bacterial infection in cases with no specifically requested targets (non-bacteria, mycobacteria etc.), with most common situations and agents seen in a New England setting. Clinically significant Gram-negative bacteria are usually rods, as shown near bottom right. Although some gram-negative bacteria can be recognized by "bench tests", diagnosis in the modern microbiology lab usually involvesMALDI-TOF and/or multitarget assay.
The adjectivesgram-positive andgram-negative derive from the surname ofHans Christian Gram, a Danish bacteriologist; aseponymous adjectives, their initial letter can be either capitalG or lower-caseg, depending on whichstyle guide (e.g., that of theCDC), if any, governs the document being written.[28] This is further explained atGram staining § Orthographic note.
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^abcGöker, Markus; Oren, Aharon (22 January 2024). "Valid publication of names of two domains and seven kingdoms of prokaryotes".International Journal of Systematic and Evolutionary Microbiology.74 (1).doi:10.1099/ijsem.0.006242.PMID38252124.
^abDesvaux M, Hébraud M, Talon R, Henderson IR (April 2009). "Secretion and subcellular localizations of bacterial proteins: a semantic awareness issue".Trends Microbiol.17 (4):139–45.doi:10.1016/j.tim.2009.01.004.PMID19299134.
^abcSutcliffe IC (October 2010). "A phylum level perspective on bacterial cell envelope architecture".Trends Microbiol.18 (10):464–70.doi:10.1016/j.tim.2010.06.005.PMID20637628.