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Ephrin B3

From Wikipedia, the free encyclopedia
(Redirected fromEFNB3)
Protein-coding gene in the species Homo sapiens
EFNB3
Available structures
PDBOrtholog search:PDBeRCSB
List of PDB id codes

4BKF

Identifiers
AliasesEFNB3, EFL6, EPLG8, LERK8, ephrin B3
External IDsOMIM:602297;MGI:109196;HomoloGene:1076;GeneCards:EFNB3;OMA:EFNB3 - orthologs
Gene location (Human)
Chromosome 17 (human)
Chr.Chromosome 17 (human)[1]
Chromosome 17 (human)
Genomic location for EFNB3
Genomic location for EFNB3
Band17p13.1Start7,705,202bp[1]
End7,711,372bp[1]
Gene location (Mouse)
Chromosome 11 (mouse)
Chr.Chromosome 11 (mouse)[2]
Chromosome 11 (mouse)
Genomic location for EFNB3
Genomic location for EFNB3
Band11 B3|11 42.8 cMStart69,444,918bp[2]
End69,451,031bp[2]
RNA expression pattern
Bgee
HumanMouse (ortholog)
Top expressed in
  • middle temporal gyrus

  • nucleus accumbens

  • endothelial cell

  • prefrontal cortex

  • Brodmann area 46

  • ganglionic eminence

  • dorsolateral prefrontal cortex

  • caudate nucleus

  • entorhinal cortex

  • ventricular zone
Top expressed in
  • entorhinal cortex

  • CA3 field

  • dentate gyrus of hippocampal formation granule cell

  • lumbar subsegment of spinal cord

  • perirhinal cortex

  • superior frontal gyrus

  • nucleus of stria terminalis

  • primary visual cortex

  • subiculum

  • suprachiasmatic nucleus
More reference expression data
BioGPS


More reference expression data
Gene ontology
Molecular function
Cellular component
Biological process
Sources:Amigo /QuickGO
Orthologs
SpeciesHumanMouse
Entrez

1949

13643

Ensembl

ENSG00000108947

ENSMUSG00000003934

UniProt

Q15768

O35393

RefSeq (mRNA)

NM_001406

NM_007911

RefSeq (protein)

NP_001397

NP_031937

Location (UCSC)Chr 17: 7.71 – 7.71 MbChr 11: 69.44 – 69.45 Mb
PubMed search[3][4]
Wikidata
View/Edit HumanView/Edit Mouse

Ephrin-B3 is aprotein that in humans is encoded by theEFNB3gene.[5][6]

EFNB3, a member of theephrin gene family, is important in brain development as well as in its maintenance. The EPH and EPH-related receptors comprise the largest subfamily ofreceptor protein-tyrosine kinases. EPH receptors typically have a singlekinase domain and an extracellular region containing a Cysteine-rich domain and 2 fibronectin type III repeats. The ephrin ligands and receptors have been named by the Eph Nomenclature Committee (1997) based on their structures and sequence relationships. Ephrins are divided into the ephrin-A (EFNA) class, which are anchored to the membrane by aglycosylphosphatidylinositol linkage, and the ephrin-B (EFNB) class, which are transmembrane proteins. Ephrin-B ligands also contain an intracellular tail with highly conservedtyrosine residues and aPDZ-binding motif at theC-terminus.[7] This tail functions as a mechanism for reverse signaling, where signaling occurs into the ligand-containing cell, as opposed to the cell with the receptor. Upon receptor-ligand interaction the tyrosine residues become phosphorylated and there is recruitment ofPDZ domain-containing proteins.[7] The Eph family of receptors are similarly divided into two groups based on the similarity of their extracellular domain sequences and their affinities for binding ephrin-A and ephrin-B ligands.[6]EphrinB3 has been implicated in mediating various developmental events, particularly in thenervous system. EphrinB3 reverse signaling is important for axon pruning and synapse and spine formation during postnatal development of the nervous system.[8][9] Previous work has also shown that signaling through this ligand is important for radial migration during cortical development.[8] Moreover, levels of EFNB3 expression are particularly high in severalforebrain subregions compared to other brain subregions, and may play a pivotal role in forebrain function. It has been suggested that ephrinB3 signaling is necessary forsynaptic plasticity to occur in thehippocampus; this implicates ephrinB3 as a major player in learning and memory.[9] More recently, ephrinB3 has been shown to regulate proliferation ofneural stem cells in the adultsubventricular zone (SVZ).[8][10]

References

[edit]
  1. ^abcGRCh38: Ensembl release 89: ENSG00000108947Ensembl, May 2017
  2. ^abcGRCm38: Ensembl release 89: ENSMUSG00000003934Ensembl, May 2017
  3. ^"Human PubMed Reference:".National Center for Biotechnology Information, U.S. National Library of Medicine.
  4. ^"Mouse PubMed Reference:".National Center for Biotechnology Information, U.S. National Library of Medicine.
  5. ^Tang XX, Pleasure DE, Ikegaki N (May 1997)."cDNA cloning, chromosomal localization, and expression pattern of EPLG8, a new member of the EPLG gene family encoding ligands of EPH-related protein-tyrosine kinase receptors".Genomics.41 (1):17–24.doi:10.1006/geno.1997.4615.PMID 9126477.
  6. ^ab"Entrez Gene: EFNB3 ephrin-B3".
  7. ^abKlein, Rudiger (November 15, 2012)."Eph/ephrin signalling during development".Development.139 (22):4105–9.doi:10.1242/dev.074997.PMID 23093422.
  8. ^abcRodger, Jennifer; Lorena Salvatore; Paolo Migani (2012)."Should I Stay or Should I Go? Ephs and Ephrins in Neuronal Migration".Neurosignals.20 (3):190–201.doi:10.1159/000333784.PMID 22456188.
  9. ^abHruska, Martin; Matthew B. Dalva (2012)."Ephrin regulation of synapse formation, function and plasticity".Molecular and Cellular Neuroscience.50 (1):35–44.doi:10.1016/j.mcn.2012.03.004.PMC 3631567.PMID 22449939.
  10. ^Ricard, Jerome; Jessica Salinas; Lissette Garcia; Daniel J. Liebl (2006). "EphrinB3 regulates cell proliferation and survival in adult neurogenesis".Molecular and Cellular Neuroscience.31 (4):713–22.doi:10.1016/j.mcn.2006.01.002.PMID 16483793.S2CID 206830930.

Further reading

[edit]


Intercellular signaling peptides and proteins /ligands
Growth factors
Ephrin
Other
Angiopoietin
CNTF
EGF (ErbB)
EGF
(ErbB1/HER1)
ErbB2/HER2
ErbB3/HER3
ErbB4/HER4
FGF
FGFR1
FGFR2
FGFR3
FGFR4
Unsorted
HGF (c-Met)
IGF
IGF-1
IGF-2
Others
LNGF (p75NTR)
PDGF
RET (GFL)
GFRα1
GFRα2
GFRα3
GFRα4
Unsorted
SCF (c-Kit)
TGFβ
Trk
TrkA
TrkB
TrkC
VEGF
Others


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