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Ephrin A1

From Wikipedia, the free encyclopedia
(Redirected fromEFNA1)
Protein-coding gene in the species Homo sapiens

EFNA1
Available structures
PDBOrtholog search:PDBeRCSB
List of PDB id codes

3HEI,3MBW,3CZU

Identifiers
AliasesEFNA1, B61, ECKLG, EFL1, EPLG1, LERK-1, LERK1, TNFAIP4, Ephrin A1, GMAN
External IDsOMIM:191164;MGI:103236;HomoloGene:3262;GeneCards:EFNA1;OMA:EFNA1 - orthologs
Gene location (Human)
Chromosome 1 (human)
Chr.Chromosome 1 (human)[1]
Chromosome 1 (human)
Genomic location for EFNA1
Genomic location for EFNA1
Band1q22Start155,127,876bp[1]
End155,134,899bp[1]
Gene location (Mouse)
Chromosome 3 (mouse)
Chr.Chromosome 3 (mouse)[2]
Chromosome 3 (mouse)
Genomic location for EFNA1
Genomic location for EFNA1
Band3 F1|3 39.04 cMStart89,179,040bp[2]
End89,188,449bp[2]
RNA expression pattern
Bgee
HumanMouse (ortholog)
Top expressed in
  • right lobe of liver

  • right lung

  • skin of abdomen

  • skin of leg

  • upper lobe of left lung

  • left lobe of thyroid gland

  • right lobe of thyroid gland

  • minor salivary glands

  • parotid gland

  • rectum
Top expressed in
  • lip

  • left lung lobe

  • right lung lobe

  • lumbar spinal ganglion

  • right kidney

  • colon

  • duodenum

  • corneal stroma

  • jejunum

  • proximal tubule
More reference expression data
BioGPS
More reference expression data
Gene ontology
Molecular function
Cellular component
Biological process
Sources:Amigo /QuickGO
Orthologs
SpeciesHumanMouse
Entrez

1942

13636

Ensembl

ENSG00000169242

ENSMUSG00000027954

UniProt

P20827

P52793

RefSeq (mRNA)

NM_004428
NM_182685

NM_001162425
NM_010107

RefSeq (protein)

NP_004419
NP_872626

NP_001155897
NP_034237

Location (UCSC)Chr 1: 155.13 – 155.13 MbChr 3: 89.18 – 89.19 Mb
PubMed search[3][4]
Wikidata
View/Edit HumanView/Edit Mouse

Ephrin A1 is aprotein that in humans is encoded by theEFNA1gene.[5][6][7]

This gene encodes a member of theephrin (EPH) family. The ephrins and EPH-related receptors comprise the largest subfamily ofreceptor protein-tyrosine kinases and have been implicated in mediating developmental events, especially in thenervous system and inerythropoiesis. Based on their structures and sequence relationships, ephrins are divided into the ephrin-A (EFNA) class, which are anchored to themembrane by aglycosylphosphatidylinositol linkage, and the ephrin-B (EFNB) class, which aretransmembrane proteins. This gene encodes an EFNA class ephrin which binds to theEPHA2,EPHA4,EPHA5,EPHA6, andEPHA7 receptors. Two transcript variants that encode different isoforms were identified through sequence analysis.[7]

References

[edit]
  1. ^abcGRCh38: Ensembl release 89: ENSG00000169242Ensembl, May 2017
  2. ^abcGRCm38: Ensembl release 89: ENSMUSG00000027954Ensembl, May 2017
  3. ^"Human PubMed Reference:".National Center for Biotechnology Information, U.S. National Library of Medicine.
  4. ^"Mouse PubMed Reference:".National Center for Biotechnology Information, U.S. National Library of Medicine.
  5. ^Holzman LB, Marks RM, Dixit VM (Nov 1990)."A novel immediate-early response gene of endothelium is induced by cytokines and encodes a secreted protein".Molecular and Cellular Biology.10 (11):5830–8.doi:10.1128/mcb.10.11.5830.PMC 361366.PMID 2233719.
  6. ^Cerretti DP, Lyman SD, Kozlosky CJ, Copeland NG, Gilbert DJ, Jenkins NA, Valentine V, Kirstein MN, Shapiro DN, Morris SW (Apr 1996)."The genes encoding the eph-related receptor tyrosine kinase ligands LERK-1 (EPLG1, Epl1), LERK-3 (EPLG3, Epl3), and LERK-4 (EPLG4, Epl4) are clustered on human chromosome 1 and mouse chromosome 3".Genomics.33 (2):277–82.doi:10.1006/geno.1996.0192.PMID 8660976.
  7. ^ab"Entrez Gene: EFNA1 ephrin-A1".

Further reading

[edit]
Intercellular signaling peptides and proteins /ligands
Growth factors
Ephrin
Other
Angiopoietin
CNTF
EGF (ErbB)
EGF
(ErbB1/HER1)
ErbB2/HER2
ErbB3/HER3
ErbB4/HER4
FGF
FGFR1
FGFR2
FGFR3
FGFR4
Unsorted
HGF (c-Met)
IGF
IGF-1
IGF-2
Others
LNGF (p75NTR)
PDGF
RET (GFL)
GFRα1
GFRα2
GFRα3
GFRα4
Unsorted
SCF (c-Kit)
TGFβ
Trk
TrkA
TrkB
TrkC
VEGF
Others
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