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ChimerDB

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ChimerDB
Content
Descriptionfusion sequences.
Contact
Research centerEwha Womans University, Seoul 120-750, Korea.
LaboratoryDivision of Molecular Life Sciences
AuthorsNamshin Kim
Primary citationKim & al. (2006)[1]
Access
Websitehttp://genome.ewha.ac.kr/ChimerDB/

ChimerDB incomputational biology is a database offusion sequences.[1]

ChimerDB currently consists of three searchable datasets.[2]

  • ChimerKB is a curated knowledge base of 1,066 fusion genes sourced from publicly available scientific literature.
  • ChimerPub provides continuously updated descriptions on fusion genestext mined from publications.
  • ChimerSeq is a database ofRNA-seq data of fusion sequences downloaded from theTCGA data portal.

See also

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References

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  1. ^abKim, Namshin; Kim Pora; Nam Seungyoon; Shin Seokmin; Lee Sanghyuk (Jan 2006)."ChimerDB--a knowledgebase for fusion sequences".Nucleic Acids Res.34 (Database issue): D21–4.doi:10.1093/nar/gkj019.PMC 1347382.PMID 16381848.
  2. ^Lee, Myunggyo; Lee, Kyubum; Yu, Namhee; Jang, Insu; Choi, Ikjung; Kim, Pora; Jang, Ye Eun; Kim, Byounggun; Kim, Sunkyu (2017-01-04)."ChimerDB 3.0: an enhanced database for fusion genes from cancer transcriptome and literature data mining".Nucleic Acids Research.45 (Database issue):D784 –D789.doi:10.1093/nar/gkw1083.ISSN 0305-1048.PMC 5210563.PMID 27899563.

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