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Primary nutritional groups

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Group of organisms
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Primary nutritional groups are groups oforganisms, divided in relation to the nutrition mode according to the sources of energy and carbon, needed for living, growth and reproduction. The sources of energy can be light or chemical compounds; the sources of carbon can be of organic or inorganic origin.[1]

The termsaerobic respiration,anaerobic respiration andfermentation (substrate-level phosphorylation) do not refer to primary nutritional groups, but simply reflect the different use of possible electron acceptors in particular organisms, such asO2 in aerobic respiration, ornitrate (NO
3
),sulfate (SO2−
4
) orfumarate in anaerobic respiration, or various metabolic intermediates in fermentation.

Primary sources of energy

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Phototrophs absorb light inphotoreceptors and transform it into chemical energy.
Chemotrophs release chemical energy.

The freed energy is stored aspotential energy inATP,carbohydrates, orproteins. Eventually, the energy is used for life processes such as moving, growth and reproduction.

Plants and some bacteria can alternate between phototrophy and chemotrophy, depending on the availability of light.

Primary sources of reducing equivalents

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Organotrophs use organic compounds aselectron/hydrogen donors.
Lithotrophs use inorganic compounds as electron/hydrogen donors.

Theelectrons or hydrogen atoms fromreducing equivalents (electron donors) are needed by both phototrophs and chemotrophs inreduction-oxidation reactions that transfer energy in the anabolic processes ofATP synthesis (in heterotrophs) orbiosynthesis (in autotrophs). The electron or hydrogen donors are taken up from the environment.

Organotrophic organisms are often also heterotrophic, using organic compounds as sources of both electrons and carbon. Similarly, lithotrophic organisms are often also autotrophic, using inorganic sources of electrons and CO2 as their inorganic carbon source.

Some lithotrophic bacteria can utilize diverse sources of electrons, depending on the availability of possible donors.

The organic or inorganic substances (e.g., oxygen) used as electron acceptors needed in the catabolic processes of aerobic or anaerobicrespiration andfermentation are not taken into account here.

For example, plants are lithotrophs because they use water as their electron donor for the electron transport chain across the thylakoid membrane. Animals are organotrophs because they use organic compounds as electron donors to synthesize ATP (plants also do this, but this is not taken into account). Both use oxygen in respiration as electron acceptor, but this character is not used to define them as lithotrophs.

Primary sources of carbon

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Heterotrophsmetabolize organic compounds to obtain carbon for growth and development.
Autotrophs usecarbon dioxide (CO2) as their source of carbon.

Energy and carbon

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Yellow fungus
Classification of organisms based on their metabolism
Energy sourceLightphoto- -troph
Moleculeschemo-
Electron donorOrganic compounds organo- 
Inorganic compoundslitho-
Carbon sourceOrganic compounds hetero-
Carbon dioxideauto-

Achemoorganoheterotrophicorganism is one that requires organicsubstrates to get itscarbon for growth and development, and that obtains its energy from the decomposition of an organic compound. This group of organisms may be further subdivided according to what kind of organic substrate and compound they use.Decomposers are examples of chemoorganoheterotrophs which obtain carbon and electrons or hydrogen from dead organic matter.Herbivores andcarnivores are examples of organisms that obtain carbon and electrons or hydrogen from living organic matter.

Chemoorganotrophs areorganisms which use the chemical energy inorganic compounds as their energy source and obtain electrons or hydrogen from the organic compounds, including sugars (i.e.glucose), fats and proteins.[2] Chemoheterotrophs also obtain the carbon atoms that they need for cellular function from these organic compounds.

Allanimals are chemoheterotrophs (meaning they oxidize chemical compounds as a source of energy and carbon), as arefungi,protozoa, and somebacteria. The important differentiation amongst this group is that chemoorganotrophs oxidize only organic compounds whilechemolithotrophs instead use oxidation ofinorganic compounds as a source of energy.[3]

Primary metabolism table

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The following table gives some examples for each nutritional group:[4][5][6][7]

Energy
source
Electron/
H-atom
donor
Carbon sourceNameExamples
Sun Light
Photo-
Organic
-organo-
Organic
-heterotroph
PhotoorganoheterotrophSome bacteria (Rhodobacter) and some archaea (haloarchaea)[8]
Carbon dioxide
-autotroph
PhotoorganoautotrophSome bacteria perform anoxygenic photosynthesis and fix atmospheric carbon (Chloroflexia,Heliobacterium)
Inorganic
-litho-*
Organic
-heterotroph
PhotolithoheterotrophPurple non-sulfur bacteria
Carbon dioxide
-autotroph
PhotolithoautotrophSome bacteria (cyanobacteria), some eukaryotes (eukaryotic algae,land plants).Photosynthesis.
Breaking
Chemical
Compounds
Chemo-
Organic
-organo-
Organic
-heterotroph
ChemoorganoheterotrophPredatory,parasitic, andsaprophytic prokaryotes. Some eukaryotes (heterotrophicprotists,fungi,animals)
Carbon dioxide
-autotroph
ChemoorganoautotrophSome archaea (anaerobic methanotrophic archaea).[9]Chemosynthesis, synthetically autotrophicEscherichia coli bacteria[10] andPichia pastoris yeast.[11]
Inorganic
-litho-*
Organic
-heterotroph
ChemolithoheterotrophSome bacteria (Oceanithermus profundus)[12]
Carbon dioxide
-autotroph
ChemolithoautotrophSome bacteria (Nitrobacter), some archaea (Methanobacteria).Chemosynthesis.

*Some authors use-hydro- when the source is water.

Look up-troph in Wiktionary, the free dictionary.

The common final part-troph is from Ancient Greekτροφήtrophḗ "nutrition".

Mixotrophs

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Some, usually unicellular, organisms can switch between different metabolic modes, for example between photoautotrophy, photoheterotrophy, and chemoheterotrophy inChroococcales.[13]Rhodopseudomonas palustris – another example – can grow with or withoutoxygen, use either light, inorganic or organic compounds for energy.[14] Suchmixotrophic organisms may dominate theirhabitat, due to their capability to use more resources than either photoautotrophic or organoheterotrophic organisms.[15]

Examples

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All sorts of combinations may exist in nature, but some are more common than others. For example, most plants arephotolithoautotrophic, since they use light as an energy source, water as electron donor, and CO2 as a carbon source. All animals and fungi arechemoorganoheterotrophic, since they use organic substances both as chemical energy sources and as electron/hydrogen donors and carbon sources. Someeukaryotic microorganisms, however, are not limited to just one nutritional mode. For example, some algae live photoautotrophically in the light, but shift to chemoorganoheterotrophy in the dark. Even higher plants retained their ability to respire heterotrophically on starch at night which had been synthesised phototrophically during the day.

Prokaryotes show a great diversity ofnutritional categories.[16] For example,cyanobacteria and manypurple sulfur bacteria can bephotolithoautotrophic, using light for energy,H2O or sulfide as electron/hydrogen donors, and CO2 as carbon source, whereasgreen non-sulfur bacteria can bephotoorganoheterotrophic, using organic molecules as both electron/hydrogen donors and carbon sources.[8][16] Many bacteria arechemoorganoheterotrophic, using organic molecules as energy, electron/hydrogen and carbon sources.[8] Some bacteria are limited to only one nutritional group, whereas others are facultative and switch from one mode to the other, depending on the nutrient sources available.[16]Sulfur-oxidizing,iron, andanammox bacteria as well asmethanogens arechemolithoautotrophs, using inorganic energy, electron, and carbon sources.Chemolithoheterotrophs are rare because heterotrophy implies the availability of organic substrates, which can also serve as easy electron sources, making lithotrophy unnecessary.Photoorganoautotrophs are uncommon since their organic source of electrons/hydrogens would provide an easy carbon source, resulting in heterotrophy.

Synthetic biology efforts enabled the transformation of the trophic mode of twomodel microorganisms from heterotrophy to chemoorganoautotrophy:

See also

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Notes and references

[edit]
  1. ^Eiler A (December 2006)."Evidence for the ubiquity of mixotrophic bacteria in the upper ocean: implications and consequences".Applied and Environmental Microbiology.72 (12):7431–7.Bibcode:2006ApEnM..72.7431E.doi:10.1128/AEM.01559-06.PMC 1694265.PMID 17028233.Table 1: Definitions of metabolic strategies to obtain carbon and energy
  2. ^Todar K (2009)."Todar's Online Textbook of Bacteriology".Nutrition and Growth of Bacteria. Retrieved2014-04-19.
  3. ^Kelly DP, Mason J, Wood A (1987). "Energy Metabolism in Chemolithotrophs". In van Verseveld HW, Duine JA (eds.).Microbial Growth on C1 Compounds. Springer. pp. 186–7.doi:10.1007/978-94-009-3539-6_23.ISBN 978-94-010-8082-8.
  4. ^Lwoff A, Van Niel CB, Ryan TF, Tatum EL (1946)."Nomenclature of nutritional types of microorganisms"(PDF).Cold Spring Harbor Symposia on Quantitative Biology.11 (5th ed.):302–3.
  5. ^Andrews JH (1991).Comparative Ecology of Microorganisms and Macroorganisms. Springer. p. 68.ISBN 978-0-387-97439-2.
  6. ^Yafremava LS, Wielgos M, Thomas S, Nasir A, Wang M, Mittenthal JE, Caetano-Anollés G (2013)."A general framework of persistence strategies for biological systems helps explain domains of life".Frontiers in Genetics.4: 16.doi:10.3389/fgene.2013.00016.PMC 3580334.PMID 23443991.
  7. ^Margulis L, McKhann HI, Olendzenski L, eds. (1993).Illustrated Glossary of Protoctista: Vocabulary of the Algae, Apicomplexa, Ciliates, Foraminifera, Microspora, Water Molds, Slime Molds, and the Other Protoctists. Jones & Bartlett Learning. pp. xxv.ISBN 978-0-86720-081-2.
  8. ^abcMorris, J. et al. (2019). "Biology: How Life Works", 3rd edition, W. H. Freeman.ISBN 978-1319017637
  9. ^Kellermann MY, Wegener G, Elvert M, Yoshinaga MY, Lin YS, Holler T, et al. (November 2012)."Autotrophy as a predominant mode of carbon fixation in anaerobic methane-oxidizing microbial communities".Proceedings of the National Academy of Sciences of the United States of America.109 (47):19321–6.Bibcode:2012PNAS..10919321K.doi:10.1073/pnas.1208795109.PMC 3511159.PMID 23129626.
  10. ^abGleizer S, Ben-Nissan R, Bar-On YM, Antonovsky N, Noor E, Zohar Y, et al. (November 2019)."Conversion of Escherichia coli to Generate All Biomass Carbon from CO2".Cell.179 (6): 1255–1263.e12.doi:10.1016/j.cell.2019.11.009.PMC 6904909.PMID 31778652.
  11. ^abGassler T, Sauer M, Gasser B, Egermeier M, Troyer C, Causon T, et al. (December 2019)."The industrial yeastPichia pastoris is converted from a heterotroph into an autotroph capable of growth on CO2".Nature Biotechnology.38 (2):210–6.doi:10.1038/s41587-019-0363-0.PMC 7008030.PMID 31844294.
  12. ^Miroshnichenko ML, L'Haridon S, Jeanthon C, Antipov AN, Kostrikina NA, Tindall BJ, et al. (May 2003)."Oceanithermus profundus gen. nov., sp. nov., a thermophilic, microaerophilic, facultatively chemolithoheterotrophic bacterium from a deep-sea hydrothermal vent".International Journal of Systematic and Evolutionary Microbiology.53 (Pt 3):747–52.doi:10.1099/ijs.0.02367-0.PMID 12807196.
  13. ^Rippka R (March 1972). "Photoheterotrophy and chemoheterotrophy among unicellular blue-green algae".Archives of Microbiology.87 (1):93–98.doi:10.1007/BF00424781.S2CID 155161.
  14. ^Li, Meijie; Ning, Peng; Sun, Yi; Luo, Jie; Yang, Jianming (2022)."Characteristics and Application ofRhodopseudomonas palustris as a Microbial Cell Factory".Frontiers in Bioengineering and Biotechnology.10: 897003.doi:10.3389/fbioe.2022.897003.ISSN 2296-4185.PMC 9133744.PMID 35646843.
  15. ^Eiler A (December 2006)."Evidence for the ubiquity of mixotrophic bacteria in the upper ocean: implications and consequences".Applied and Environmental Microbiology.72 (12):7431–7.Bibcode:2006ApEnM..72.7431E.doi:10.1128/AEM.01559-06.PMC 1694265.PMID 17028233.
  16. ^abcTang KH, Tang YJ, Blankenship RE (2011)."Carbon metabolic pathways in phototrophic bacteria and their broader evolutionary implications".Front Microbiol.2: 165.doi:10.3389/fmicb.2011.00165.PMC 3149686.PMID 21866228.
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