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Labyrinthulomycetes

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(Redirected fromAmphitremida)
Class of protists that produce a filamentous network

Labyrinthulomycetes
Cell with network of ectoplasmic filaments (Aplanochytrium sp.)
Scientific classificationEdit this classification
Domain:Eukaryota
Clade:Diaphoretickes
Clade:SAR
Clade:Stramenopiles
Phylum:Bigyra
Subphylum:Sagenista
Class:Labyrinthulomycetes
Arx, 1970, Dick, 2001
Orders[1]
Synonyms
  • LabyrinthulomycotaWhittaker, 1969
  • LabyrinthomorphaPage in Levine et al., 1980
  • LabyrinthuleaOlive, 1975
    ex Cavalier-Smith, 1989

Labyrinthulomycetes (ICNafp) orLabyrinthulea[2] (ICZN) is aclass ofprotists that produce a network offilaments or tubes,[3] which serve as tracks for the cells to glide along and absorbnutrients for them. The two main groups are thelabyrinthulids (or slime nets) andthraustochytrids. They are mostlymarine, commonly found asparasites onalgae andseagrasses or as decomposers on dead plant material. They also include some parasites of marine invertebrates andmixotrophic species that live in a symbiotic relationship withzoochlorella.[4][5][6]

Characteristics

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Although they are outside the cells, the filaments of Labyrinthulomycetes are surrounded by amembrane. They are formed and connected with the cytoplasm by a unique organelle called a sagenogen or bothrosome. The cells areuninucleated and typically ovoid, and move back and forth along theamorphous network at speeds varying from 5-150 μm per minute. Among the labyrinthulids, the cells are enclosed within the tubes, and among the thraustochytrids, they are attached to their sides.

Evolution

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Evolutionary origin

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Labyrinthulomycetes are notfungi, but amonophyletic group ofeukaryotes within theStramenopiles. They belong to the phylumBigyra, which contains other heterotrophic microorganisms such as thebicosoecids. Considering that theplastids fromStramenopiles are possibly the result of an event ofendosymbiosis in theirlast common ancestor, the bicosoecids and the labyrinthulomycetes could have originated from amixotrophicalgal common ancestor thatsecondarily lost their plastids.[3]

Some characteristics of the labyrinthulomycetes can be explained by their origin from ancestral plastids. They produceomega-3 poly-unsaturated fatty acids using adesaturase usually present inchloroplasts. The zoospores oflabyrinthulids have aneyespot composed of membrane-bound granules that resembles eyespots of photosynthetic stramenopiles, which are either within a plastid or believed to be derived from a plastid.[3]

WithinBigyra, the labyrinthulomycetes are thesister group toEogyrea, a class containing the speciesPseudophyllomitus vesiculosus and theenvironmental clade called MAST-4. Together they compose the subphylumSagenista.[7][8]

Stramenopiles

Classification

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Labyrinthulomycetes or Labyrinthulea used to compose the defunct fungalphylum Labyrinthulomycota.[9] They were originally considered unusualslime moulds, although they are not very similar to the other sorts. The structure of theirzoospores and genetic studies show them to be a primitive group ofheterokonts, but their classification and treatment remains somewhat unsettled.

This class usually contained two orders, Labyrinthulales and Thraustochytriales (ICBN), orLabyrinthulida andThraustochytrida (ICZN), but a different classification has recently been proposed.[6][10][11][1][9]

Genetic code

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The labyrinthulomyceteThraustochytrium aureum is notable for thealternative genetic code of itsmitochondria which useTTA as astop codon instead of coding forLeucine.[13] This code is represented byNCBI translation table 23,Thraustochytrium mitochondrial code.[14]

Genetic codeTranslation
table
DNA codonRNA codonTranslation
with this code
Standard code
(Translation table 1)
Thraustochytrium mitochondrial23TTAUUASTOP = Ter(*)Leu(L)

Gallery

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References

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  1. ^abcAdl SM, Bass D, Lane CE, Lukeš J, Schoch CL, Smirnov A, Agatha S, Berney C, Brown MW, Burki F, Cárdenas P, Čepička I, Chistyakova L, del Campo J, Dunthorn M, Edvardsen B, Eglit Y, Guillou L, Hampl V, Heiss AA, Hoppenrath M, James TY, Karnkowska A, Karpov S, Kim E, Kolisko M, Kudryavtsev A, Lahr DJG, Lara E, Le Gall L, Lynn DH, Mann DG, Massana R, Mitchell EAD, Morrow C, Park JS, Pawlowski JW, Powell MJ, Richter DJ, Rueckert S, Shadwick L, Shimano S, Spiegel FW, Torruella G, Youssef N, Zlatogursky V, Zhang Q (2019)."Revisions to the Classification, Nomenclature, and Diversity of Eukaryotes".Journal of Eukaryotic Microbiology.66 (1):4–119.doi:10.1111/jeu.12691.PMC 6492006.PMID 30257078.
  2. ^Cavalier-Smith, T. (1997). "Sagenista and bigyra, two phyla of heterotrophic heterokont chromists".Archiv für Protistenkunde.148 (3):253–267.doi:10.1016/S0003-9365(97)80006-1.
  3. ^abcTsui, Clement K M; Marshall, Wyth; Yokoyama, Rinka; Honda, Daiske; Lippmeier, J Casey; Craven, Kelly D; Peterson, Paul D; Berbee, Mary L (January 2009). "Labyrinthulomycetes phylogeny and its implications for the evolutionary loss of chloroplasts and gain of ectoplasmic gliding".Molecular Phylogenetics and Evolution.50 (1):129–40.doi:10.1016/j.ympev.2008.09.027.PMID 18977305.
  4. ^Schärer, L.; Knoflach, D.; Vizoso, D. B.; Rieger, G.; Peintner, U. (2007)."Thraustochytrids as novel parasitic protists of marine free-living flatworms:Thraustochytrium caudivorum sp. nov. Parasitizes Macrostomum lignano"(PDF).Marine Biology.152 (5): 1095.doi:10.1007/s00227-007-0755-4.S2CID 4836350.
  5. ^Pan, Jingwen (2016).Labyrinthulomycetes diversity meta-analysis (MSc). University of British Columbia.doi:10.14288/1.0223199.
  6. ^abGomaa, Fatma; Mitchell, Edward A. D.; Lara, Enrique (2013)."Amphitremida (poche, 1913) is a new major, ubiquitous labyrinthulomycete clade".PLoS One.8 (1): e53046.Bibcode:2013PLoSO...853046G.doi:10.1371/journal.pone.0053046.PMC 3544814.PMID 23341921.
  7. ^Cavalier-Smith, Thomas (2017)."Kingdom Chromista and its eight phyla: a new synthesis emphasising periplastid protein targeting, cytoskeletal and periplastid evolution, and ancient divergences".Protoplasma.255 (1):297–357.doi:10.1007/s00709-017-1147-3.PMC 5756292.PMID 28875267.
  8. ^Thakur, Rabindra; Shiratori, Takashi; Ishida, Ken-ichiro (2019)."Taxon-rich Multigene Phylogenetic Analyses Resolve the Phylogenetic Relationship Among Deep-branching Stramenopiles".Protist.170 (5): 125682.doi:10.1016/j.protis.2019.125682.ISSN 1434-4610.PMID 31568885.S2CID 202865459.
  9. ^abcBennett, Reuel M.; Honda, D.; Beakes, Gordon W.; Thines, Marco (2017). "Chapter 14. Labyrinthulomycota". In Archibald, John M.; Simpson, Alastair G.B.; Slamovits, Claudio H. (eds.).Handbook of the Protists. Springer. pp. 507–542.doi:10.1007/978-3-319-28149-0_25.ISBN 978-3-319-28147-6.
  10. ^Anderson, O. Roger; Cavalier-Smith, Thomas (2012)."Ultrastructure of Diplophrys parva, a New Small Freshwater Species, and a Revised Analysis of Labyrinthulea (Heterokonta)".Acta Protozoologica.8 (1):291–304.doi:10.4467/16890027AP.12.023.0783.
  11. ^abFioRito, Rebecca; Leander, Celeste; Leander, Brian (2016). "Characterization of three novel species of Labyrinthulomycota isolated from ochre sea stars (Pisaster ochraceus)".Marine Biology.163 (8): 170.doi:10.1007/s00227-016-2944-5.S2CID 43399688.
  12. ^Hassett, Brandon T.; Gradinger, Rolf (2018). "New Species of Saprobic Labyrinthulea (=Labyrinthulomycota) and the Erection of a gen. nov. to Resolve Molecular Polyphyly within the Aplanochytrids".Journal of Eukaryotic Microbiology.65 (4):475–483.doi:10.1111/jeu.12494.hdl:10037/13570.ISSN 1550-7408.PMID 29265676.S2CID 46820836.
  13. ^Wideman, Jeremy G.; Monier, Adam; Rodríguez-Martínez, Raquel; Leonard, Guy; Cook, Emily; Poirier, Camille; Maguire, Finlay; Milner, David S.; Irwin, Nicholas A. T.; Moore, Karen; Santoro, Alyson E. (2019-11-25)."Unexpected mitochondrial genome diversity revealed by targeted single-cell genomics of heterotrophic flagellated protists".Nature Microbiology.5 (1):154–165.doi:10.1038/s41564-019-0605-4.hdl:10871/39819.ISSN 2058-5276.PMID 31768028.S2CID 208279678.
  14. ^Elzanowski A, Ostell J, Leipe D, Soussov V."The Genetic Codes".Taxonomy browser. National Center for Biotechnology Information (NCBI), U.S. National Library of Medicine. Retrieved11 August 2016.
  15. ^Cienkowski, L. (1867). Ueber den Bau und die Entwicklung der Labyrinthuleen.Arch. mikr. Anat., 3:274,[1].

External links

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