Automation and visualization of flow cytometry data analysis pipelines
What is CytoPipelineGUI?
CytoPipelineGUI is the companion package ofCytoPipeline, and is used for interactive visualization. It implements two shiny applications : - a shiny app for interactive comparison of flow frames that are the results of CytoProcessingSteps of the same or different CytoPipeline experiments.
It is launched using the following statement:CytoPipelineCheckApp()
- a shiny app for interactive visualization and manual adjustments of scale transformation objects. It is launched using the following statement:ScaleTransformApp()
License
TheCytoPipelineGUI code is provided underGPL license version 3.0 or higher. The documentation, including the manual pages and the vignettes, are distributed under aCC BY-SA 4.0 license.
Citation
If you useCytopipelineGUI in your research, please use the following citation:
Hauchamps P, Bayat B, Delandre S, Hamrouni M, Toussaint M, Temmerman S, Lin D, Gatto L (2024). “CytoPipeline and CytoPipelineGUI: a Bioconductor R package suite for building and visualizing automated pre-processing pipelines for flow cytometry data.”BMC Bioinformatics,25(1), 80.doi:10.1186/s12859-024-05691-zhttps://doi.org/10.1186/s12859-024-05691-z.
or runcitation("CytoPipelineGUI") to get the bibtex entry.