Align Protein
sequencesStructural alignments (Expresso)
Combine popular aligners (M-Coffee)
Transmembrane proteins (PSI/TM-Coffee)
Homology extension (PSI-Coffee)
Align RNA
sequencesSecondary structure (R-Coffee)
Tertiary structure (SARA-Coffee)
Combine popular aligners (M-Coffee)
Align DNA
sequencesCombine popular aligners (M-Coffee)
Homologous promoter regions (Pro-coffee)
Evaluation
| TCS | Evaluates your Alignment and outputs a Colored version indicating the local reliability. >> Cite |
| iRMSD-APDB | Evaluates Multiple Sequence Alignment using structural information with APDB and iRMSD. >> Cite |
| T-RMSD | Allows fine-grained structural clustering of a given group of related protein domains >> Cite |
| Strike | Evaluation of protein MSAs using a single 3D structure >> Cite |
Other
| Advanced | Run your alignment using full featured T-Coffee options. >> Cite |
| All | All available T-Coffee methods |
Useful links
| Google Group | Support and discussion group |
| tcoffee.org | Find out more about T-Coffee project and documentation |
| Cedric Notredame | Home page,Courses andBlog |
| Download | Sources and binaries are available for download at this link |
| Check it out for latest T-Coffee developments and new tips | |
| T-Coffee has a page on Facebook | |
| ResearchGate | Follow the discussion on ResearchGate |
Mirror sites
 | Vital-IT, Swiss Institute of Bioinformatics (SIB) |
 | EBI, European Bioinformatics Institute |
 | IGS lab., CNRS |
 | Max-Planck Institute for Developmental Biology |
 | Cornell |
 | EMBNet-Spain |
 | Pasteur Institute |
T-Coffee Server is hosted by the