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PDBx/mmCIF Software Tools

RCSB Data Extraction and Deposition Preparation Tools

• pdb_extract – Tools and examples for extracting mmCIF data from structure determination applications (workstation/command-line version)
• PointSuite– generate BIOMT and CIF symmetry records for macromolecular assemblies with point and helical symmetries

RCSB Data Format Conversion and Validation Tools

• MAXITUpdated! October 16, 2025– An application for processing and annotating of macromolecular structure data
• sf-convert standalone tool – A format conversion standalone tool for structure factor files that supports more than a dozen file formats
• sf-convert web tool – A format conversion web tool for structure factor files that supports more than a dozen file formats
• DCC – A wrapper of third party packages to aid in validation of structure factors
• PDBML2CIF – A tool for converting PDBML data files into mmCIF data files

RCSB Data Parsing Tools

• Core Wrapper – A library that exports C++ mmCIF accessors to Python
• CIFPARSE-OBJ – A Class Library of Access Tools for mmCIF in C++
• CIFTABLE (ISTable)– A Class Library of Table Access Tools for mmCIF data

RCSB Dictionary and Data Management Tools

• MMCIF Dictionary SuiteUpdated! January 10, 2022– RCSB/PDB tools to parse, validate, manage PDBx/mmCIF data dictionaries
• Db LoaderUpdated! December 10, 2021– An application to load mmCIF data into relational databases and XML

Visualization Tools Supporting PDBx/mmCIF

Other PDBx/mmCIF Software Libraries and Tools

View the RCSB Data Processing Software Tools License Agreement.

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