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Package: rfishbase 5.0.1

Carl Boettiger

rfishbase: R Interface to 'FishBase'

A programmatic interface to 'FishBase', re-written basedon an accompanying 'RESTful' API. Access tables describing over30,000 species of fish, their biology, ecology, morphology, andmore. This package also supports experimental access to'SeaLifeBase' data, which contains nearly 200,000 speciesrecords for all types of aquatic life not covered by'FishBase.'

Authors:Carl Boettiger [cre, aut],Scott Chamberlain [aut],Duncan Temple Lang [aut],Peter Wainwright [aut],Kevin Cazelles [ctb],Guohuan Su [ctb]

rfishbase_5.0.1.tar.gz
rfishbase_5.0.1.zip(r-4.5)rfishbase_5.0.1.zip(r-4.4)rfishbase_5.0.1.zip(r-4.3)
rfishbase_5.0.1.tgz(r-4.5-any)rfishbase_5.0.1.tgz(r-4.4-any)rfishbase_5.0.1.tgz(r-4.3-any)
rfishbase_5.0.1.tar.gz(r-4.5-noble)rfishbase_5.0.1.tar.gz(r-4.4-noble)
rfishbase_5.0.1.tgz(r-4.4-emscripten)rfishbase_5.0.1.tgz(r-4.3-emscripten)
rfishbase.pdf |rfishbase.html
rfishbase/json (API)
NEWS

# Install 'rfishbase' in R:
install.packages('rfishbase', repos = c('https://ropensci.r-universe.dev', 'https://cloud.r-project.org'))

Reviews:rOpenSci Software Review #137

Bug tracker:https://github.com/ropensci/rfishbase/issues

Pkgdown site:https://docs.ropensci.org

On CRAN:

Conda:

fishfishbasetaxonomy

10.11 score 116 stars 2 packages 764 scripts 1.4k downloads 14 mentions 50 exports 37 dependencies

Last updated 3 months agofrom:eca51344d7 (on master). Checks:6 OK, 3 NOTE. Indexed: yes.

TargetResultLatest binary
Doc / VignettesOKMar 14 2025
R-4.5-winNOTEMar 14 2025
R-4.5-macNOTEMar 14 2025
R-4.5-linuxNOTEMar 14 2025
R-4.4-winOKMar 14 2025
R-4.4-macOKMar 14 2025
R-4.4-linuxOKMar 14 2025
R-4.3-winOKMar 14 2025
R-4.3-macOKMar 14 2025

Exports:%>%available_releasesbrainsc_codecommon_namescommon_to_scicountrycountrysubcountrysubrefdietdiet_itemsecologyecosystemestimatefaoareasfb_tablesfb_tblfecundityfooditemsgeneticsintroductionslarvaelength_freqlength_lengthlength_weightload_taxamaturitymorphologymorphometricsoxygenpopcharpopgrowthpoplfpopllpoplwpopqbpredatorsrationreferencesreproductionsci_to_commonspawningspeciesspecies_by_ecosystemspecies_namesspeedstocksswimmingsynonymsvalidate_names

Dependencies:askpassblobcachemclicpp11curlDBIdbplyrdplyrduckdbduckdbfsfansifastmapfsgenericsgluehttrjsonlitelifecyclemagrittrmemoisemimeopensslpillarpkgconfigpurrrR6rlangstringistringrsystibbletidyrtidyselectutf8vctrswithr

Citation

Development and contributors

Readme and manuals

Help Manual

Help pageTopics
List available releasesavailable_releases
brainsbrains
c_codec_code
common namescommon_names sci_to_common
common_to_scicommon_to_sci
countrycountry
countrysubcountrysub
countrysubrefcountrysubref
dietdiet
diet_itemsdiet_items
ecologyecology
ecosystemecosystem
estimateestimate
faoareasfaoareas
List the tables available on fishbase/sealifebasefb_tables
Access a fishbase or sealifebase tablefb_tbl
fecundityfecundity
A table of all the the species found in FishBase, including taxonomic classification and the Species Code (SpecCode) by which the species is identified in FishBase.fishbase
fooditemsfooditems
geneticsgenetics
introductionsintroductions
larvaelarvae
length_freqlength_freq poplf
length_lengthlength_length popll
length_weightlength_weight poplw
load_taxaload_taxa
maturitymaturity
morphologymorphology
morphometricsmorphometrics
oxygenoxygen
popcharpopchar
popgrowthpopgrowth
popqbpopqb
predatorspredators
rationration
referencesreferences
reproductionreproduction
A table of all the the species found in SeaLifeBase, including taxonomic classification and the Species Code (SpecCode) by which the species is identified in SeaLifeBasesealifebase
spawningspawning
speciesspecies
Species list by ecosystemspecies_by_ecosystem
species_namesspecies_names
speedspeed
stocksstocks
swimmingswimming
synonymssynonyms
validate_namesvalidate_names

Usage by other packages (reverse dependencies)


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