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.2024 Sep 9:15:1445186.
doi: 10.3389/fmicb.2024.1445186. eCollection 2024.

The use of thermostable fluorescent proteins for live imaging inSulfolobus acidocaldarius

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The use of thermostable fluorescent proteins for live imaging inSulfolobus acidocaldarius

Alejandra Recalde et al. Front Microbiol..

Abstract

Introduction: Among hyperthermophilic organisms,in vivo protein localization is challenging due to the high growth temperatures that can disrupt proper folding and function of mostly mesophilic-derived fluorescent proteins. While protein localization in the thermophilic model archaeonS. acidocaldarius has been achieved using antibodies with fluorescent probes in fixed cells, the use of thermostable fluorescent proteins for live imaging in thermophilic archaea has so far been unsuccessful. Given the significance of live protein localization in the field of archaeal cell biology, we aimed to identify fluorescent proteins for use inS. acidocaldarius.

Methods: We expressed various previously published and optimized thermostable fluorescent proteins along with fusion proteins of interest and analyzed the cells using flow cytometry and (thermo-) fluorescent microscopy.

Results: Of the tested proteins, thermal green protein (TGP) exhibited the brightest fluorescence when expressed inSulfolobus cells. By optimizing the linker between TGP and a protein of interest, we could additionally successfully fuse proteins with minimal loss of fluorescence. TGP-CdvB and TGP-PCNA1 fusions displayed localization patterns consistent with previous immunolocalization experiments.

Discussion: These initial results in live protein localization inS. acidocaldarius at high temperatures, combined with recent advancements in thermomicroscopy, open new avenues in the field of archaeal cell biology. This progress finally enables localization experiments in thermophilic archaea, which have so far been limited to mesophilic organisms.

Keywords: Sulfolobus; archaea; fluorescent microscopy; in vivo localization; thermal fluorescent protein; thermomicroscopy.

Copyright © 2024 Recalde, Abdul-Nabi, Junker, van der Does, Elsässer, van Wolferen and Albers.

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Conflict of interest statement

The authors declare that the research was conducted in the absence of any commercial or financial relationships that could be construed as a potential conflict of interest. The authors declared that they were an editorial board member of Frontiers, at the time of submission. This had no impact on the peer review process and the final decision.

Figures

FIGURE 1
FIGURE 1
Expression of different green fluorescent proteins inS. acidocaldarius(A) Flow cytometry onS. acidocaldarius cells expressing different green fluorescent proteins induced with 0.2% xylose. Total number of events per sample: 100,000.(B) Normalized Median Fluorescent Intensity (MFI) from the flow cytometry experiments. Samples were normalized against the MFI value of the empty plasmid. Results are the average of at least three replicas. Welch’st-test: *** indicatingp ≤ 0.001, *p ≤ 0.05 and ns: not significant.(C) Fluorescent microscopy, phase contrast and merged images ofS. acidocaldarius cells expressing TGP from a plasmid induced with 0.2% xylose, imaged at RT on agarose pads.(D) Fluorescent microscopy at high temperature. DIC and merged images ofS. acidocaldarius cells expressing TGP, imaged at 75°C. Rulers indicate 2 μm.(E) In-gel fluorescence of TGP, when samples were boiled (+) or not (–) in SDS containing buffer. E.p., empty plasmid; RT, room temperature.
FIGURE 2
FIGURE 2
Fluorescence of different TGP fusion proteins.(A) Fluorescence intensity ofS. acidocaldarius cells expressing different TGP-HA and TGP-LacS fusions, as shown with flow cytometry at room temperature.(B) Normalized Median Fluorescent Intensity (MFI) from the flow cytometry experiments. Samples were normalized against the empty plasmid MFI value. Results are the average of at least three replicas.(C) Fluorescent microscopy, phase contrast and merged images of cells expressing different TGP-LacS fusions. Scale bar: 2 μm.(D) Influence of different linkers in the intensity of fluorescence of TGP-LacS fusions as observed in flow cytometry and(E) the corresponding MFI values. Samples were normalized against the empty plasmid MFI value. Results are the average of at least three replicas. Number of events for flow cytometry: 100,000. Welch’st-test: *** indicatingp ≤ 0.001; **p ≤ 0.01; *p ≤ 0.05; ns, not significant; SL, short linker; TL, thermolinker; FL, flexible linker; SRL, semi-rigid linker; RL, rigid linker. For details on the sequences of the linkers, see Table 2.
FIGURE 3
FIGURE 3
Live cell localization of different TGP fusion proteins. Fluorescence microscopy images and a merge with phase contrast images of(A) CdvB rings(B) LacS and(C) PCNA1.(D) Number of foci per cell in PCNA localization (three pictures were used for counting foci,n = 48). Scale bar: 2 μm. Additional examples can be found in Supplementary Figure 3.
FIGURE 4
FIGURE 4
Expression of yellow fluorescent proteins inS. acidocaldarius.(A) Fluorescent microscopy, phase contrast and merged images of cells on agarose pads at room temperature expressing mfYFP and hfYFP.(B) Fluorescent microscopy at high temperature. DIC and merged images ofS. acidocaldarius cells expressing mfYFP at 75°C using the VAHEAT device. Scale bar: 2 μm.(C) Flow cytometry fluorescence intensity of cells expressing different yellow FP at RT and 0.2% xylose and(D) normalized Median Fluorescent Intensity (MFI) values from the FC curves. Samples were normalized against the empty plasmid MFI value, and subsequently against the MFI value of TGP. Results are the average of at least three replicas. Welch’st-test: *** indicatingp ≤ 0.001, **p ≤ 0.01 and ns, not significant.(E) In gel fluorescence of hfYFP and mfYFP, when samples were boiled (+) or not (–) in SDS containing buffer.(F) Western blot with anti-GFP antibodies.
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References

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Grants and funding

The authors declare that financial support was received for the research, authorship, and/or publication of this article. AR was supported by the BMBF 031B0848C. MW was funded by VW Momentum grant (94993). S-VA acknowledges the funding of the HotAcidFACTORYSulfolobus acidocaldarius as novel thermoacidophilic bio-factory project within the BMBF funding initiative Mikrobielle Biofabriken für die industrielle Bioökonomie—Neuartige Plattformorganismen für innovative Produkte und nachhaltige Bioprozesse. We acknowledge support by the Open Access Publication Fund of the University of Freiburg.

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