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Review
.2022 Nov;7(11):1744-1755.
doi: 10.1038/s41564-022-01215-8. Epub 2022 Oct 17.

The cell biology of archaea

Affiliations
Review

The cell biology of archaea

Marleen van Wolferen et al. Nat Microbiol.2022 Nov.

Abstract

The past decade has revealed the diversity and ubiquity of archaea in nature, with a growing number of studies highlighting their importance in ecology, biotechnology and even human health. Myriad lineages have been discovered, which expanded the phylogenetic breadth of archaea and revealed their central role in the evolutionary origins of eukaryotes. These discoveries, coupled with advances that enable the culturing and live imaging of archaeal cells under extreme environments, have underpinned a better understanding of their biology. In this Review we focus on the shape, internal organization and surface structures that are characteristic of archaeal cells as well as membrane remodelling, cell growth and division. We also highlight some of the technical challenges faced and discuss how new and improved technologies will help address many of the key unanswered questions.

© 2022. Springer Nature Limited.

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Conflict of interest statement

Competing interests

The authors declare no competing interests.

Figures

Figure 1
Figure 1
The wide spectrum of archaeal cell shapes and sizes schematically visualized in scale. Representative microscopy images are reprinted from several studies on archaea including: Archaeal viruses ,Nanopusillus acidilobi,Nanoarchaeum equitans,Prometheoarchaeum syntrophicum,Nitrosopumilus maritimusCandidatusAltiarchaeum hamiconnexum,Methanobrevibacter smithii,Sulfolobus islandicus,Pyrococcus furiosus,Ignicoccus hospitalis,Methanothermus fervidus,Haloferax volcanii,Haloquadratum walsbyi.
Figure 2
Figure 2
The distribution of key components of different archaeal cell biology processes. Squares filled in yellow represent the presence of different cell envelope components: glycocalyx; a double membrane; pseudopeptidoglycan; S-layer. Squares filled in blue represent the presence of cytoskeleton components: tubulin/artubulin; crenactin/actin; CetZ and MreB. Squares filled in green represent the presence of membrane remodeling components: FtsZ, SepF, ESCRT-III and Vps4. Squares filled in red represent the presence of surface structures: archaeallum, type IV pili (T4P) or other surface structures. Representative species of the following phyla have been analyzed: Euryarchaeota, Nano-archaeota (Nano), Thaumarchaeota (Thau), Korarchaeota (K), Crenarchaeota and Asgard (A).
Figure 3
Figure 3. The archaeal cell envelope.
(A) Examples of cell envelope structures of different archaea, including: the S-layer proteins ofSulfolobus; the S-layer protein ofHaloferax containing a lipid-anchor; the cell envelope ofMethanothermus containing both a pseudopeptidoglycan layer surmounted by an S-layer; the cell envelope ofMethanosarcina containing an S-layer and a methanochondoitin layer on top. (B) Different archaeal surface appendages: the archaellum, type IV pili, threads, fimbriae, cannulae, and hami. (C) DifferentN-glycan structures found especially on the surface proteins ofS. acidocaldarius, S. solfataricus, S. tokodaii, H. volcanii and M. thermolithotrophicus.
Figure 4
Figure 4. Fluorescence protein localization images from different archaeal cell biology studies.
(A) Midcell localization of fluorescently tagged S-layer protein inH.volcanii; (B) Images ofS. acidocaldarius with fluorescently labelled membrane (red) and DNA (blue) taken using the “Sulfoscope” at 75°C ; (C)Haloquadratum strain Bajool9 (JCM 15065), DNA stained with acridine orange ; (D) SRRF super-resolution images of immunolabeled dividingS. acidocaldarius cells showing ring structures of CdvB (purple), and CdvB1 (green) and DNA stained with Hoechst (blue), (scale bar, 0.5 μm) ; (E) ImmunolabelledP. calidifontis cells stained with anti-Crenactin antibodies ; (F) Structured Illumination Microscopy (SIM) maximum projections of aM. smithii cell stained with anti-SepF (cyan) and anti-FtsZ antibodies (magenta). Scale bars 0.5 μm. (G)Pyrococcus furiosus cell stained with Alexa Fluor 488, showing cell envelope growth (From left to right: image directly after staining; image 90 min after subculturing; and image 180 min after subculturing; scale bar, 1 μm) ; (H)H. volcanii cells expressing fluorescently tagged FtsZ1 (purple) and FtsZ2 (green), (scale bar 2 μm) ; (I) Single-molecule localization microscopy imaging ofH. volcanii cells expressing fluorescently tagged FtsZ1 (green) .
Figure 5
Figure 5
Schematic overview of the two main studied cell division mechanisms in archaea. Upper panel: the ESCRT-III mediated cell division process ofS. acidocaldarius as displayed in four stages: (1) Localization of CdvA at mid-cell subsequently recruiting the ESCRT-III homolog CdvB, which forms a ring. (2) ESCRT-III homologues CdvB1 and CdvB2 are recruited to mid-cell by CdvB. (3) CdvB is degraded by the proteasome triggering the constriction of CdvB1 and CdvB2. (4) The Vps4 homolog CdvC most likely disassembles the CdvB1/2 ring resulting in cell membrane abscission. Lower panel: the FtsZ based cell division process ofH. volcanii as displayed in four stages: (1) FtsZ1 forms a ring at mid-cell. (2) SepF dimers localize in an FtsZ1-dependent manner to the future cell division site, and SepF recruits FtsZ2. (3). FtsZ2 forms a ring. (4) Constriction of the divisome results in cell division.
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