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doi: 10.1261/rna.2841511. Epub 2011 Jul 29.

RNase P: at last, the key finds its lock

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RNase P: at last, the key finds its lock

Benoît Masquida et al. RNA.2011 Sep.

Abstract

Apart from the ribosome, the crystal structure of the bacterial RNase P in complex with a tRNA, reported by Reiter and colleagues recently, constitutes the first example of a multiple turnover RNA enzyme. Except in rare exceptions, RNase P is ubiquitous and, like the ribosome, is older than the initial branch point of the phylogenetic tree. Importantly, the structure shows how the RNA and the protein moieties cooperate to process the pre-tRNA substrates. The catalytic site comprises some critical RNA residues spread over the secondary structure but gathered in a compact volume next to the protein, which helps recognize and orient the substrate. The discussion here outlines some important aspects of that crystal structure, some of which could apply to RNA molecules in general.

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Figures

FIGURE 1.
FIGURE 1.
Relative positions and orientations of the tRNA and of the RNase P protein resulting from the superimposition of the RNase P RNA from the crystal structure (blue) (Reiter et al. 2010) and the three-dimensional ab initio model (gold) (Tsai et al. 2003). The normalized root mean square deviation (nrmsd) by means of superimposition of phosphorus atoms from the RNase P RNA is 11.6 Å. Distances between elements from the tRNA and the protein are indicated on the picture. The large distance between the anticodon loops from the tRNAs results from a 35° rotation between the acceptor stems. The protein moieties have a 39° differential orientation and an offset of 16 Å (calculated with lsqman) (Kleywegt and Jones 1994).
FIGURE 2.
FIGURE 2.
(A) Interactions within the RNase P RNA and between the RNase P RNA and the tRNA represented on an expended secondary structure diagram, permitting a better view of the tertiary interactions (gray symbols). Colors are identical to the schemes described by Reiter et al. (2010). Conserved regions (CRs) are numbered (from I–V), and nucleotides are black type set. (B) Crystal structure of the complex highlighting residues (raspberry surface) from the RNase P RNA (blue surface) that interact with the tRNA (green ribbon). The protein is represented as a pink ribbon.
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References

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