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Comparative Study
.2006 Jul;98(1):141-55.
doi: 10.1093/aob/mcl079. Epub 2006 May 4.

Phylogenetics of Papaver and related genera based on DNA sequences from ITS nuclear ribosomal DNA and plastid trnL intron and trnL-F intergenic spacers

Affiliations
Comparative Study

Phylogenetics of Papaver and related genera based on DNA sequences from ITS nuclear ribosomal DNA and plastid trnL intron and trnL-F intergenic spacers

James C Carolan et al. Ann Bot.2006 Jul.

Abstract

Background and aims: Representatives from Papaver, Roemeria, Stylomecon and Meconopsis were studied to elucidate phylogenetic relationships between Papaver and these closely allied genera.

Methods: Two molecular data sets were used individually and combined and included sequences from the internally transcribed spacer region (ITS) of 18S-26S nuclear ribosomal DNA and the trnL intron and the trnL-trnF intergenic spacer region of plastid DNA.

Key results: Parsimony analysis demonstrated that the genus is not monophyletic unless the closely related Roemeria, Stylomecon and Meconopsis cambrica are included in a revised circumscription of Papaver. Three distinct clades are resolved in a combined ITS and trnL-F analysis. Clade 1 consists of Papaver sect. Meconella and Asian Meconopsis. Clade 2 contains a group here identified as Papaver s.s., comprising sections Carinatae, Meconidium, Oxytona, Papaver, Pilosa, Pseudopilosa and Rhoeadium. Clade 3 consists of Papaver sect. Argemonidium and Roemeria refracta. A number of diagnostic indels support these groupings. Within clade 2, sects. Papaver and Rhoeadium are either not monophyletic or lack evidence supporting their monophyly.

Conclusions: The results of this molecular analysis indicate that a number of morphological characters such as valvate capsule dehiscence, dark or light filaments and sessile stigmatic discs have arisen in parallel. The phylogenetic trees are incongruent with the existing taxonomy of Papaver, and a revised classification is suggested.

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Figures

F<sc>ig</sc>. 1.
Fig. 1.
One of 151 equally most-parsimonious trees generated from the ITS sequences. Support for each node is represented by bootstrap percentages (BP) below the branch (shown only when >50 % and consistent with the strict consensus tree). An arrow indicates clades that did not appear in the strict consensus tree. Numbers above each branch indicate the numbers of character changes along each lineage (accelerated transformation, ACCTRAN, optimization). Groups that possess characteristic indels are indicated using letters (refer to Table 2).
F<sc>ig</sc>. 2.
Fig. 2.
One of eight equally most-parsimonious trees generated from thetrnL–F sequences using maximum parsimony. Support for each node is represented by bootstrap percentages (BP) below the branch (shown only when >50 % and consistent with the strict consensus tree). Numbers above each branch indicate the numbers of character changes along each lineage (ACCTRAN optimization). An arrow indicates branches that did not appear in the strict consensus tree. Groups that possess characteristic indels are indicated using letters (refer to Table 2).
F<sc>ig</sc>. 3.
Fig. 3.
One of eight equally most-parsimonious trees generated from the combined ITS andtrnL–F data sets using maximum parsimony. Support for each node is represented by bootstrap percentages (BP) below the branch (shown only when >50 % and consistent with the strict consensus tree). Numbers above each branch indicate the numbers of character changes along each lineage (ACCTRAN optimization). An arrow indicates branches that did not appear in the strict consensus tree.
See this image and copyright information in PMC

References

    1. Baldwin BG, Sanderson MJ, Porter JM, Wojciechowski MF, Cambell CS, Donoghue MJ. 1995. The ITS region of nuclear ribosomal DNA: a valuable source of evidence on angiosperm phylogeny. Annals of the Missouri Botanical Garden 82: 247–277.
    1. Bittkau C, Kadereit JW. 2002. Phylogenetic and geographical relationships inPapaver alpinum L. (Papaveraceae) based on RAPD data.Botanische Jahrbücher für Systematik, Pflanzengeschichte und Pflanzengeographie 123: 463–479.
    1. Carolan JC. 2004.Phylogenetic analysis of PapaverL. PhD thesis, University of Dublin, Trinity College, Ireland.
    1. Carolan JC, Hook ILI, Walsh JJ, Hodkinson TR. 2002. Using AFLP markers for species differentiation and assessment of genetic variability ofin vitro culturedPapaver bracteatum (sectionOxytona).In vitro cellular and developmental biology. Plant 38: 300–307.
    1. Chase MW, de Bruijn AY, Reeves G, Cox AV, Rudall PJ, Johnson MAT, Eguiarte LE. 2000. Phylogenetics of Asphodelaceae (Asparagales): an analysis of plastidrbcL andtrnL–F DNA sequences. Annals of Botany 86: 935–956.

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